Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
VPS13D	0	genome.wustl.edu	36	1	12382883	12382883	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	1	12382883	12382883	G	A	SNP	VPS13D	NM_015378.2	human	genbank	54_36p	+1	reviewed	missense	c.11693	p.S3898N	0.996	NULL	HMMPfam_UBA,superfamily_UBA-like,HMMPfam_DUF1162,HMMSmart_SM00165	-	no_errors	160	2	1.22	39	11	22.00	13	4	23.53
PSME4	0	genome.wustl.edu	36	2	53969413	53969413	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	2	53969413	53969413	A	C	SNP	PSME4	NM_014614.2	human	genbank	54_36p	-1	validated	missense	c.3995	p.L1332R	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors	71	0	0.00	60	25	29.41	60	15	20.00
FRYL	0	genome.wustl.edu	36	4	48262466	48262466	+	Splice_Site	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	4	48262466	48262466	C	T	SNP	FRYL	NM_015030.1	human	genbank	54_36p	-1	validated	splice_site	c.3170-1	e26-1	1.000	-	-	-	no_errors	57	0	0.00	48	14	22.58	4	0	0.00
HEATR7B2	0	genome.wustl.edu	36	5	41094054	41094054	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	5	41094054	41094054	G	T	SNP	HEATR7B2	NM_173489.4	human	genbank	54_36p	-1	validated	missense	c.624	p.S208R	0.001	NULL	superfamily_ARM repeat	-	no_errors	385	4	1.02	60	18	23.08	NA	NA	NA
PCDHB16	0	genome.wustl.edu	36	5	140543532	140543532	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	5	140543532	140543532	C	T	SNP	PCDHB16	NM_020957.1	human	genbank	54_36p	+1	reviewed	missense	c.1214	p.T405M	0.301	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors	47	0	0.00	18	4	18.18	NA	NA	NA
ADRA1A	0	genome.wustl.edu	36	8	26683778	26683778	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	8	26683778	26683778	G	A	SNP	ADRA1A	NM_033303.2	human	genbank	54_36p	-1	reviewed	silent	c.1206	p.S402	0.173	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	280	1	0.35	53	20	27.03	NA	NA	NA
TFAM	0	genome.wustl.edu	36	10	59824797	59824797	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	10	59824797	59824797	G	A	SNP	TFAM	NM_003201.1	human	genbank	54_36p	+1	provisional	missense	c.698	p.R233H	0.053	superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors	93	0	0.00	28	16	36.36	26	6	18.75
BUB3	0	genome.wustl.edu	36	10	124911770	124911770	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	10	124911770	124911770	G	T	SNP	BUB3	NM_004725.2	human	genbank	54_36p	+1	reviewed	missense	c.605	p.R202L	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors	102	0	0.00	39	7	15.22	103	39	27.46
ELF5	0	genome.wustl.edu	36	11	34471642	34471642	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	11	34471642	34471642	G	A	SNP	ELF5	NM_198381.2	human	genbank	54_36p	-1	reviewed	silent	c.345	p.G115	0.979	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	125	2	1.56	24	6	20.00	NA	NA	NA
HERC2P4	0	genome.wustl.edu	36	16	32071067	32071067	+	RNA	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	16	32071067	32071067	G	A	SNP	HERC2P4	NR_002827.1	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.793	-	-	-	pseudogene	181	1	0.55	24	4	14.29	0	0	0.00
ADAM11	0	genome.wustl.edu	36	17	40210925	40210925	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	17	40210925	40210925	C	A	SNP	ADAM11	NM_002390.4	human	genbank	54_36p	+1	reviewed	missense	c.2150	p.T717K	0.071	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_1,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_EGF/Laminin"	-	no_errors	124	0	0.00	14	7	33.33	NA	NA	NA
MGAT5B	0	genome.wustl.edu	36	17	72445737	72445737	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4b019998-e435-4144-84eb-f8ca8c8b0a25	a5982d14-b13d-4a1a-b791-4d50ad91651d	17	72445737	72445737	C	T	SNP	MGAT5B	NM_198955.2	human	genbank	54_36p	+1	validated	missense	c.1528	p.R510W	1.000	NULL	NULL	-	no_errors	294	0	0.00	34	7	17.07	NA	NA	NA