Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
CASZ1	0	genome.wustl.edu	36	1	10638385	10638385	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	1	10638385	10638385	C	T	SNP	CASZ1	NM_001079843.1	human	genbank	54_36p	-1	validated	missense	c.1573	p.G525S	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	30	0	0.00	67	45	40.18	NA	NA	NA
SLC6A9	0	genome.wustl.edu	36	1	44241210	44241210	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	1	44241210	44241210	T	A	SNP	SLC6A9	NM_201649.1	human	genbank	54_36p	-1	validated	missense	c.844	p.N282Y	0.955	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors	67	0	0.00	68	41	36.61	NA	NA	NA
DNMT3A	0	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	178	5	2.72	63	64	50.00	NA	NA	NA
ATP13A5	0	genome.wustl.edu	36	3	194511175	194511175	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	3	194511175	194511175	G	C	SNP	ATP13A5	NM_198505.2	human	genbank	54_36p	-1	provisional	missense	c.2471	p.A824G	1.000	superfamily_SSF56784,superfamily_SSF81665	HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors	157	1	0.62	123	102	45.13	NA	NA	NA
PCDHA13	0	genome.wustl.edu	36	5	140244230	140244230	+	Silent	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	5	140244230	140244230	G	A	SNP	PCDHA13	NM_018904.2	human	genbank	54_36p	+1	reviewed	silent	c.2193	p.A731	0.239	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors	8	0	0.00	31	26	44.07	NA	NA	NA
PPP2R2B	0	genome.wustl.edu	36	5	145949924	145949924	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	5	145949924	145949924	G	A	SNP	PPP2R2B	NM_181676.1	human	genbank	54_36p	-1	reviewed	missense	c.1120	p.R374C	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_PR55_1,PatternScan_PR55_2,HMMPfam_PP2A_B_N,HMMPfam_PP2A_B_subs_rcg,PatternScan_WD_REPEATS_1	-	no_errors	223	0	0.00	171	123	41.14	NA	NA	NA
C6orf118	0	genome.wustl.edu	36	6	165635643	165635643	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	6	165635643	165635643	C	T	SNP	C6orf118	NM_144980.3	human	genbank	54_36p	-1	validated	missense	c.158	p.R53Q	0.017	NULL	NULL	-	no_errors	49	0	0.00	180	63	25.61	NA	NA	NA
ASB4	0	genome.wustl.edu	36	7	94953408	94953408	+	Splice_Site	SNP	T	T	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	7	94953408	94953408	T	G	SNP	ASB4	NM_016116.1	human	genbank	54_36p	+1	reviewed	splice_site	c.187+2	e1+2	1.000	-	-	-	no_errors	65	0	0.00	109	71	39.23	NA	NA	NA
PZP	0	genome.wustl.edu	36	12	9202328	9202328	+	Silent	SNP	A	A	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	12	9202328	9202328	A	G	SNP	PZP	NM_002864.2	human	genbank	54_36p	-1	validated	silent	c.3249	p.N1083	0.998	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors	253	8	3.03	242	39	13.83	NA	NA	NA
KRAS	0	genome.wustl.edu	36	12	25271549	25271549	+	Missense_Mutation	SNP	G	G	T	rs104886029		TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	12	25271549	25271549	G	T	SNP	KRAS	NM_033360.3	human	genbank	54_36p	-1	reviewed	missense	c.176	p.A59E	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	83	1	1.16	74	52	40.62	NA	NA	NA
ANKRD33	0	genome.wustl.edu	36	12	50571180	50571180	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	12	50571180	50571180	C	T	SNP	ANKRD33	NM_182608.1	human	genbank	54_36p	+1	validated	missense	c.1183	p.P395S	0.144	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors	59	1	1.64	67	63	48.46	NA	NA	NA
RPL6	0	genome.wustl.edu	36	12	111330795	111330795	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	12	111330795	111330795	C	T	SNP	RPL6	NM_000970.3	human	genbank	54_36p	-1	reviewed	missense	c.49	p.E17K	0.240	NULL	HMMPfam_Ribosomal_L6e,PatternScan_RIBOSOMAL_L6E,HMMPfam_Ribosomal_L6e_N	-	no_errors	74	1	1.32	35	17	32.08	NA	NA	NA
ENSG00000211894	0	genome.wustl.edu	36	14	105206164	105206164	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	14	105206164	105206164	T	C	SNP	ENSG00000211894	ENST00000390546	human	ensembl	54_36p	-1	known	missense	c.556	p.M186V	0.021	HMMPfam_C1-set,superfamily_SSF48726	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	34	0	0.00	43	28	38.89	NA	NA	NA
IDH2	0	genome.wustl.edu	36	15	88432842	88432842	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	15	88432842	88432842	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172K	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	65	0	0.00	75	46	38.02	NA	NA	NA
LOC401875	0	genome.wustl.edu	36	17	20457554	20457554	+	RNA	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	17	20457554	20457554	C	T	SNP	LOC401875	XR_042367.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.961	-	-	-	pseudogene	33	0	0.00	98	64	39.51	NA	NA	NA
SMURF2	0	genome.wustl.edu	36	17	60020040	60020040	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	17	60020040	60020040	T	C	SNP	SMURF2	NM_022739.3	human	genbank	54_36p	-1	validated	missense	c.314	p.N105S	1.000	HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors	352	13	3.55	65	47	41.96	NA	NA	NA
CENPB	0	genome.wustl.edu	36	20	3714879	3714879	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	20	3714879	3714879	C	T	SNP	CENPB	NM_001810.5	human	genbank	54_36p	-1	reviewed	nonsense	c.252	p.W84*	1.000	HMMSmart_CENPB,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind	HMMPfam_DDE,HMMSmart_CENPB,HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_Cenp-B_dimeris,HMMPfam_CenpB-DNA-bind,superfamily_SSF101160	-	no_errors	11	0	0.00	40	23	35.94	NA	NA	NA
ASXL1	0	genome.wustl.edu	36	20	30486932	30486933	+	Frame_Shift_Ins	INS	-	-	ACCA			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	-	-	-	ACCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	07f07406-597d-40b7-b218-ef40aad6f0bc	d1360466-cb4c-4fea-9ac9-f029dc199e94	20	30486932	30486933	-	ACCA	INS	ASXL1	NM_015338.4	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.2756_2757	p.S921fs	0.000:0.000	NULL	NULL	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA