Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC392501	0	genome.wustl.edu	36	X	91818303	91818303	+	RNA	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	X	91818303	91818303	C	T	SNP	LOC392501	XR_016267.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	74	1	1.30	36	33	47.83	128	0	0.00
SPEN	0	genome.wustl.edu	36	1	16127271	16127271	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	1	16127271	16127271	A	C	SNP	SPEN	NM_015001.2	human	genbank	54_36p	+1	reviewed	missense	c.1949	p.Y650S	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors	108	1	0.92	104	56	35.00	26	16	38.10
CATSPER4	0	genome.wustl.edu	36	1	26397073	26397073	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	1	26397073	26397073	C	A	SNP	CATSPER4	NM_198137.1	human	genbank	54_36p	+1	validated	missense	c.596	p.P199H	0.993	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors	202	1	0.49	106	30	22.06	NA	NA	NA
LRBA	0	genome.wustl.edu	36	4	152040803	152040803	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	4	152040803	152040803	T	C	SNP	LRBA	NM_006726.2	human	genbank	54_36p	-1	validated	missense	c.1772	p.Y591C	1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors	197	2	1.01	101	37	26.81	22	15	40.54
PHACTR1	0	genome.wustl.edu	36	6	13314308	13314308	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	6	13314308	13314308	T	G	SNP	PHACTR1	NM_030948.1	human	genbank	54_36p	+1	validated	missense	c.947	p.L316R	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors	110	0	0.00	159	39	19.70	6	1	14.29
ZNF783	0	genome.wustl.edu	36	7	148595232	148595232	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	7	148595232	148595232	G	A	SNP	ZNF783	ENST00000378052	human	ensembl	54_36p	+1	known	missense	c.659	p.R220K	0.002	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	-	no_errors	291	1	0.34	248	103	29.34	28	16	36.36
LZTS1	0	genome.wustl.edu	36	8	20155148	20155148	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	8	20155148	20155148	G	C	SNP	LZTS1	NM_021020.2	human	genbank	54_36p	-1	validated	missense	c.574	p.Q192E	1.000	NULL	HMMPfam_Fez1	-	no_errors	91	0	0.00	97	52	34.90	NA	NA	NA
FLJ43860	0	genome.wustl.edu	36	8	142555396	142555396	+	Silent	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	8	142555396	142555396	C	T	SNP	FLJ43860	NM_207414.2	human	genbank	54_36p	-1	validated	silent	c.1479	p.K493	0.033	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	pseudogene	55	0	0.00	120	30	20.00	NA	NA	NA
EPPK1	0	genome.wustl.edu	36	8	145012278	145012278	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	8	145012278	145012278	C	G	SNP	EPPK1	NM_031308.1	human	genbank	54_36p	-1	provisional	missense	c.7057	p.D2353H	1.000	HMMPfam_Plectin,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	no_stop_codon:bad_bp_length_for_coding_region	11	0	0.00	33	10	23.26	19	2	9.52
STK33	0	genome.wustl.edu	36	11	8431029	8431029	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	11	8431029	8431029	C	A	SNP	STK33	NM_030906.2	human	genbank	54_36p	-1	validated	missense	c.787	p.V263L	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	131	0	0.00	169	61	26.52	NA	NA	NA
C1RL	0	genome.wustl.edu	36	12	7140607	7140607	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	12	7140607	7140607	C	T	SNP	C1RL	NM_016546.1	human	genbank	54_36p	-1	provisional	missense	c.986	p.R329H	0.357	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_SER	-	no_errors	172	0	0.00	129	50	27.93	20	11	35.48
RFX4	0	genome.wustl.edu	36	12	105599943	105599943	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	12	105599943	105599943	G	A	SNP	RFX4	NM_213594.3	human	genbank	54_36p	+1	reviewed	missense	c.358	p.G120R	1.000	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors	163	0	0.00	194	65	25.10	NA	NA	NA
CSPG4	0	genome.wustl.edu	36	15	73769113	73769113	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	15	73769113	73769113	T	A	SNP	CSPG4	NM_001897.4	human	genbank	54_36p	-1	reviewed	missense	c.1348	p.R450W	0.098	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors	20	0	0.00	12	4	25.00	NA	NA	NA
LOC729217	0	genome.wustl.edu	36	16	62852158	62852158	+	RNA	SNP	G	G	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	16	62852158	62852158	G	T	SNP	LOC729217	XR_015483.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	165	0	0.00	138	48	25.81	34	0	0.00
ZC3H18	0	genome.wustl.edu	36	16	87193847	87193847	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	16	87193847	87193847	A	G	SNP	ZC3H18	NM_144604.2	human	genbank	54_36p	+1	provisional	missense	c.1078	p.R360G	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors	35	0	0.00	64	24	27.27	61	40	39.60
TP53	0	genome.wustl.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	17	7519280	7519280	C	T	SNP	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors	281	0	0.00	97	80	45.20	5	5	50.00
MCART2	0	genome.wustl.edu	36	18	27593841	27593841	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	18	27593841	27593841	C	T	SNP	MCART2	NM_001034172.2	human	genbank	54_36p	-1	validated	missense	c.782	p.R261Q	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors	70	0	0.00	54	31	36.47	1	0	0.00
PLEKHG2	0	genome.wustl.edu	36	19	44605603	44605603	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2868-03B-01W-0728-08	TCGA-AB-2868-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	865e8aa5-ec81-46af-acbc-e3becd24a1dd	10afa5bd-b1eb-4f78-8ae2-5e7df48d2c6e	19	44605603	44605603	C	T	SNP	PLEKHG2	NM_022835.2	human	genbank	54_36p	+1	validated	missense	c.1943	p.S648F	0.098	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors	214	0	0.00	272	66	19.53	25	3	10.71