Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
BRS3	0	genome.wustl.edu	36	X	135401946	135401946	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	X	135401946	135401946	C	T	SNP	BRS3	NM_001727.1	human	genbank	54_36p	+1	validated	missense	c.946	p.R316W	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	104	5	4.59	52	44	45.83	NA	NA	NA
TDRD10	0	genome.wustl.edu	36	1	152783137	152783137	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	1	152783137	152783137	G	A	SNP	TDRD10	NM_001098475.1	human	genbank	54_36p	+1	validated	missense	c.578	p.R193H	0.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_TUDOR,superfamily_RNA-binding domain RBD,superfamily_Tudor/PWWP/MBT	-	no_errors	169	4	2.31	126	87	40.65	NA	NA	NA
TET2	0	genome.wustl.edu	36	4	106375989	106375989	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	4	106375989	106375989	C	T	SNP	TET2	NM_017628.1	human	genbank	54_36p	+1	validated	nonsense	c.1441	p.Q481*	1.000	NULL	NULL	-	no_errors	77	4	4.94	109	96	46.83	40	45	52.94
SCARA5	0	genome.wustl.edu	36	8	27793118	27793118	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	8	27793118	27793118	C	T	SNP	SCARA5	NM_173833.4	human	genbank	54_36p	-1	provisional	missense	c.1238	p.R413H	1.000	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Collagen,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors	43	1	2.27	41	53	56.38	NA	NA	NA
MYO3A	0	genome.wustl.edu	36	10	26345791	26345791	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	10	26345791	26345791	G	A	SNP	MYO3A	NM_017433.4	human	genbank	54_36p	+1	reviewed	missense	c.545	p.R182Q	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540	-	no_errors	51	0	0.00	82	62	43.06	NA	NA	NA
DPP3	0	genome.wustl.edu	36	11	66006376	66006376	+	Silent	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	11	66006376	66006376	C	T	SNP	DPP3	NM_005700.3	human	genbank	54_36p	+1	reviewed	silent	c.129	p.Y43	0.795	NULL	HMMPfam_Peptidase_M49	-	no_errors	66	1	1.49	46	27	36.99	19	22	53.66
EED	0	genome.wustl.edu	36	11	85639095	85639095	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	11	85639095	85639095	C	A	SNP	EED	NM_003797.2	human	genbank	54_36p	+1	reviewed	nonsense	c.224	p.S75*	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	82	4	4.65	102	57	35.85	10	5	33.33
MYF5	0	genome.wustl.edu	36	12	79635034	79635034	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	12	79635034	79635034	A	G	SNP	MYF5	NM_005593.2	human	genbank	54_36p	+1	validated	missense	c.61	p.I21V	0.999	HMMPfam_Basic,HMMSmart_BASIC	HMMPfam_HLH,HMMSmart_HLH,HMMPfam_Basic,HMMSmart_BASIC,superfamily_HLH_basic	-	no_errors	33	3	8.33	44	21	32.31	NA	NA	NA
SMCHD1	0	genome.wustl.edu	36	18	2753718	2753718	+	Silent	SNP	T	T	C			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	18	2753718	2753718	T	C	SNP	SMCHD1	NM_015295.2	human	genbank	54_36p	+1	validated	silent	c.4650	p.D1550	0.919	NULL	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_SMC_hinge,superfamily_Smc hinge domain	-	no_errors	49	3	5.77	57	50	46.73	47	41	46.59
MEX3C	0	genome.wustl.edu	36	18	46956764	46956764	+	Silent	SNP	T	T	C			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	18	46956764	46956764	T	C	SNP	MEX3C	NM_016626.3	human	genbank	54_36p	-1	validated	silent	c.1935	p.P645	1.000	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850	HMMSmart_RING,HMMSmart_KH,PatternScan_ZF_RING_1,HMMPfam_KH_1,HMMPfam_zf-C3HC4,superfamily_SSF54791,superfamily_SSF57850	-	no_errors	116	3	2.52	83	74	47.13	21	31	59.62
BPIFB2	0	genome.wustl.edu	36	20	31065397	31065397	+	Silent	SNP	C	C	T			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	20	31065397	31065397	C	T	SNP	BPIL1	NM_025227.1	human	genbank	54_36p	+1	reviewed	silent	c.429	p.H143	0.000	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI	-	no_errors	67	7	9.46	47	47	50.00	NA	NA	NA
TET2	0	genome.wustl.edu	36	4	106376562	106376562	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	A	A	A	-	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	4	106376562	106376562	A	-	DEL	TET2	NM_017628.1	human	genbank	54_36p	+1	validated	frame_shift_del	c.2014	p.H672fs	0.114	NULL	NULL	-	no_errors	0	0	0.00	0	0	0.00	0	0	0.00
PHACTR1	0	genome.wustl.edu	36	6	13314113	13314114	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2876-03A-01W-0732-08	TCGA-AB-2876-11A-01W-0732-08	-	-	-	G	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	d48c086f-36b5-49ab-9e83-83520c701fd5	e4b17175-746c-47db-a509-7320119351b2	6	13314113	13314114	-	G	INS	PHACTR1	NM_030948.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.752_753	p.P254fs	0.638:0.521	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors	12	0	0.00	34	7	17.07	10	0	0.00