Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU USP11 0 genome.wustl.edu 36 X 46989747 46989747 + Missense_Mutation SNP T T A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a X 46989747 46989747 T A SNP USP11 NM_004651.3 human genbank 54_36p +1 reviewed missense c.2321 p.M774K 0.993 HMMPfam_UCH,superfamily_SSF54001 HMMPfam_UCH,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001 - no_errors 58 2 3.33 82 67 44.37 99 0 0.00 GPR112 0 genome.wustl.edu 36 X 135259212 135259212 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a X 135259212 135259212 C T SNP GPR112 NM_153834.3 human genbank 54_36p +1 validated missense c.5681 p.P1894L 0.002 NULL HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_ConA_like_lec_gl,PatternScan_G_PROTEIN_RECEP_F2_2 - no_errors 111 1 0.88 195 115 36.98 NA NA NA ENSG00000211619 0 genome.wustl.edu 36 2 89411214 89411214 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 2 89411214 89411214 C T SNP ENSG00000211619 ENST00000390264 human ensembl 54_36p -1 known missense c.95 p.S32N 0.823 HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726 HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726 - no_start_codon:no_stop_codon:bad_bp_length_for_coding_region 62 1 1.59 87 30 25.42 0 0 0.00 LRRC58 0 genome.wustl.edu 36 3 121532775 121532775 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 3 121532775 121532775 C T SNP LRRC58 NM_001099678.1 human genbank 54_36p -1 validated missense c.1078 p.V360I 1.000 NULL HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058 - no_errors 89 1 1.11 92 65 41.14 12 10 45.45 ILDR1 0 genome.wustl.edu 36 3 123195313 123195313 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 3 123195313 123195313 C T SNP ILDR1 NM_175924.2 human genbank 54_36p -1 provisional missense c.841 p.V281M 0.057 NULL HMMSmart_IG,HMMPfam_LSR,superfamily_SSF48726 - no_errors 104 0 0.00 159 104 39.25 1 1 50.00 KLF15 0 genome.wustl.edu 36 3 127554059 127554059 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 3 127554059 127554059 C T SNP KLF15 NM_014079.3 human genbank 54_36p -1 validated missense c.397 p.V133I 0.026 NULL HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 - no_errors 13 0 0.00 14 18 56.25 1 0 0.00 PMS2P5 0 genome.wustl.edu 36 7 73944898 73944898 + Missense_Mutation SNP G G C TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 7 73944898 73944898 G C SNP PMS2L5 ENST00000337023 human ensembl 54_36p +1 known missense c.65 p.W22S 0.000 NULL NULL - no_start_codon 101 3 2.88 51 17 25.00 3 0 0.00 STEAP1 0 genome.wustl.edu 36 7 89628094 89628094 + Missense_Mutation SNP G G A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 7 89628094 89628094 G A SNP STEAP1 NM_012449.2 human genbank 54_36p +1 reviewed missense c.124 p.V42M 0.191 NULL HMMPfam_Ferric_reduct - no_errors 106 1 0.92 128 71 35.15 NA NA NA FAM40B 0 genome.wustl.edu 36 7 128878758 128878758 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 7 128878758 128878758 C T SNP FAM40B NM_020704.1 human genbank 54_36p +1 validated missense c.343 p.R115W 1.000 HMMPfam_N1221 HMMPfam_N1221 - no_errors 124 1 0.80 81 56 40.88 1 2 66.67 XKR4 0 genome.wustl.edu 36 8 56598582 56598582 + Missense_Mutation SNP C C A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C A C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 8 56598582 56598582 C A SNP XKR4 NM_052898.1 human genbank 54_36p +1 provisional missense c.1195 p.L399M 1.000 HMMPfam_XK-related HMMPfam_XK-related - no_errors 177 2 1.10 160 139 46.03 NA NA NA PRG-3 0 genome.wustl.edu 36 9 103126156 103126156 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 9 103126156 103126156 C T SNP PRG-3 NM_017753.2 human genbank 54_36p +1 reviewed missense c.974 p.T325I 1.000 NULL HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase - no_errors 175 2 1.13 142 85 37.12 NA NA NA FLRT1 0 genome.wustl.edu 36 11 63640760 63640760 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 11 63640760 63640760 C T SNP FLRT1 NM_013280.4 human genbank 54_36p +1 reviewed missense c.445 p.R149C 0.943 HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_fn3,HMMSmart_SM00364,superfamily_L domain-like - no_errors 21 0 0.00 32 20 38.46 4 0 0.00 ELMOD1 0 genome.wustl.edu 36 11 107006491 107006491 + Missense_Mutation SNP G G A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 11 107006491 107006491 G A SNP ELMOD1 NM_018712.1 human genbank 54_36p +1 validated missense c.156 p.M52I 1.000 NULL HMMPfam_ELMO_CED12 - no_errors 159 3 1.84 166 113 40.07 NA NA NA IGSF9B 0 genome.wustl.edu 36 11 133319468 133319468 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 11 133319468 133319468 C T SNP IGSF9B NM_014987.1 human genbank 54_36p -1 validated missense c.266 p.R89Q 1.000 HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_V-set,superfamily_SSF48726 - no_errors 40 2 4.76 42 28 40.00 NA NA NA TROAP 0 genome.wustl.edu 36 12 48009233 48009233 + Missense_Mutation SNP G G A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 12 48009233 48009233 G A SNP TROAP NM_005480.1 human genbank 54_36p +1 validated missense c.1043 p.R348H 0.009 NULL NULL - no_errors 160 9 5.33 145 106 41.90 12 11 47.83 SACS 0 genome.wustl.edu 36 13 22826871 22826871 + Missense_Mutation SNP G G A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 13 22826871 22826871 G A SNP SACS NM_014363.4 human genbank 54_36p -1 validated missense c.1439 p.T480M 1.000 NULL superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Nucleotidyltransferase substrate binding subunit/domain - no_errors 34 0 0.00 48 47 49.47 6 4 40.00 ADAM21P1 0 genome.wustl.edu 36 14 69782405 69782405 + RNA SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 14 69782405 69782405 C T SNP ADAM21P NR_003951.1 human genbank 54_36p -1 validated rna NULL NULL 0.004 - - - pseudogene 163 1 0.61 150 52 25.62 NA NA NA FLRT2 0 genome.wustl.edu 36 14 85157866 85157866 + Silent SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 14 85157866 85157866 C T SNP FLRT2 NM_013231.4 human genbank 54_36p +1 reviewed silent c.255 p.H85 1.000 superfamily_SSF52058 HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058 - no_errors 78 2 2.47 101 82 44.32 NA NA NA IDH2 0 genome.wustl.edu 36 15 88432938 88432938 + Missense_Mutation SNP C C T rs121913502 TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 15 88432938 88432938 C T SNP IDH2 NM_002168.2 human genbank 54_36p -1 reviewed missense c.419 p.R140Q 1.000 HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like - no_errors 56 0 0.00 61 44 41.51 143 108 43.03 N4BP1 0 genome.wustl.edu 36 16 47137598 47137598 + Missense_Mutation SNP G G A TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 16 47137598 47137598 G A SNP N4BP1 NM_153029.3 human genbank 54_36p -1 validated missense c.2294 p.P765L 1.000 NULL NULL - no_errors 53 0 0.00 100 45 30.00 25 18 41.86 UNC45B 0 genome.wustl.edu 36 17 30505827 30505827 + Missense_Mutation SNP C C T TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 17 30505827 30505827 C T SNP UNC45B NM_173167.1 human genbank 54_36p +1 validated missense c.593 p.A198V 1.000 HMMSmart_SM00185,superfamily_ARM repeat HMMSmart_SM00185,HMMPfam_TPR_1,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like - no_errors 41 0 0.00 48 56 52.83 NA NA NA PKNOX1 0 genome.wustl.edu 36 21 43322005 43322005 + Missense_Mutation SNP G G C TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 21 43322005 43322005 G C SNP PKNOX1 NM_004571.3 human genbank 54_36p +1 validated missense c.1051 p.A351P 1.000 NULL HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like - no_errors 26 0 0.00 36 39 52.00 36 20 35.71 NPM1 0 genome.wustl.edu 36 5 170770148 170770149 + Frame_Shift_Ins INS - - TCTG TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 - - - TCTG - - Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 5 170770148 170770149 - TCTG INS NPM1 NM_002520.1 human genbank 54_36p +1 validated frame_shift_ins c.859_860 p.W288fs 1.000:1.000 NULL HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain - no_errors NA NA NA NA NA NA NA NA NA FLT3 0 genome.wustl.edu 36 13 27506244 27506245 + In_Frame_Ins INS - - TCCCATTTGAGATCATAT TCGA-AB-2877-03A-01W-0732-08 TCGA-AB-2877-11A-01W-0732-08 - - - TCCCATTTGAGATCATAT - - Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 166d3943-4006-4434-9af3-4ba8e86b6ac6 a109df8d-1667-48a5-a2bc-91d25851124a 13 27506244 27506245 - TCCCATTTGAGATCATAT INS FLT3 NM_004119.2 human genbank 54_36p -1 reviewed in_frame_ins c.1812_1811 p.605in_frame_insYDLKWE 1.000:1.000 superfamily_Kinase_like HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726 - no_errors NA NA NA NA NA NA NA NA NA