Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
RCC2	0	genome.wustl.edu	36	1	17612620	17612620	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	1	17612620	17612620	C	T	SNP	RCC2	NM_018715.1	human	genbank	54_36p	-1	validated	missense	c.1207	p.G403S	1.000	superfamily_RCC1/BLIP-II	HMMPfam_RCC1,PatternScan_RCC1_1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors	255	7	2.65	62	42	40.38	36	22	37.93
ALG6	0	genome.wustl.edu	36	1	63649475	63649475	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	1	63649475	63649475	G	A	SNP	ALG6	NM_013339.3	human	genbank	54_36p	+1	reviewed	missense	c.565	p.G189R	1.000	HMMPfam_Alg6_Alg8	HMMPfam_Alg6_Alg8	-	no_errors	169	1	0.59	74	44	37.29	18	9	32.14
DYSF	0	genome.wustl.edu	36	2	71763170	71763170	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	2	71763170	71763170	G	A	SNP	DYSF	NM_003494.1	human	genbank	54_36p	+1	reviewed	missense	c.6059	p.R2020H	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors	427	17	3.80	135	85	38.46	22	21	48.84
CADPS	0	genome.wustl.edu	36	3	62459970	62459970	+	Silent	SNP	C	C	G			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	3	62459970	62459970	C	G	SNP	CADPS	NM_003716.3	human	genbank	54_36p	-1	reviewed	silent	c.2613	p.R871	0.921	HMMPfam_DUF1041	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors	248	4	1.57	115	64	35.75	NA	NA	NA
KLHDC3	0	genome.wustl.edu	36	6	43092952	43092952	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	6	43092952	43092952	T	C	SNP	KLHDC3	NM_057161.2	human	genbank	54_36p	+1	reviewed	missense	c.44	p.V15A	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors	383	23	5.39	40	24	36.92	56	40	41.67
PKHD1	0	genome.wustl.edu	36	6	51727649	51727649	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	6	51727649	51727649	C	T	SNP	PKHD1	NM_138694.3	human	genbank	54_36p	-1	reviewed	missense	c.8689	p.V2897I	0.252	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors	314	9	2.79	126	70	35.71	NA	NA	NA
SCAF8	0	genome.wustl.edu	36	6	155195736	155195736	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	6	155195736	155195736	G	T	SNP	RBM16	NM_014892.3	human	genbank	54_36p	+1	validated	missense	c.3331	p.G1111C	0.996	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMSmart_RPR,HMMPfam_DUF618,superfamily_ENTH_VHS,superfamily_SSF54928	-	no_errors	163	3	1.81	115	24	17.27	53	20	27.03
SDK1	0	genome.wustl.edu	36	7	3980582	3980582	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	7	3980582	3980582	G	A	SNP	SDK1	NM_152744.1	human	genbank	54_36p	+1	validated	missense	c.1873	p.V625M	0.004	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors	169	15	8.15	27	19	41.30	NA	NA	NA
TRPM3	0	genome.wustl.edu	36	9	72408167	72408167	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	9	72408167	72408167	C	T	SNP	TRPM3	NM_001007471.1	human	genbank	54_36p	-1	reviewed	missense	c.2671	p.V891M	1.000	NULL	HMMPfam_Ion_trans	-	no_errors	506	9	1.75	115	71	38.17	NA	NA	NA
DYNC2H1	0	genome.wustl.edu	36	11	102485613	102485613	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	11	102485613	102485613	T	G	SNP	DYNC2H1	NM_001080463.1	human	genbank	54_36p	+1	provisional	missense	c.100	p.C34G	0.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	231	11	4.55	71	30	29.70	NA	NA	NA
TMCO5A	0	genome.wustl.edu	36	15	36030657	36030657	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	15	36030657	36030657	C	T	SNP	TMCO5A	NM_152453.2	human	genbank	54_36p	+1	provisional	missense	c.797	p.T266I	0.332	NULL	NULL	-	no_errors	214	8	3.59	77	61	44.20	NA	NA	NA
SMG1	0	genome.wustl.edu	36	16	18757451	18757451	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	16	18757451	18757451	C	T	SNP	SMG1	NM_015092.4	human	genbank	54_36p	-1	reviewed	missense	c.7007	p.R2336K	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),PatternScan_PI3_4_KINASE_2	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2	-	no_errors	229	10	4.18	93	47	33.57	56	43	43.43
SNORD37	0	genome.wustl.edu	36	19	3933568	3933568	+	RNA	SNP	A	A	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	19	3933568	3933568	A	T	SNP	SNORD37	NR_002602.1	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000	-	-	-	no_errors	106	8	7.02	12	9	42.86	4	3	42.86
HAO1	0	genome.wustl.edu	36	20	7814398	7814398	+	Silent	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	20	7814398	7814398	C	T	SNP	HAO1	NM_017545.2	human	genbank	54_36p	-1	reviewed	silent	c.927	p.K309	0.990	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases	HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1,superfamily_FMN-linked oxidoreductases	-	no_errors	379	20	5.01	142	78	35.45	NA	NA	NA
DNMT3B	0	genome.wustl.edu	36	20	30850048	30850048	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	20	30850048	30850048	C	T	SNP	DNMT3B	NM_006892.3	human	genbank	54_36p	+1	reviewed	missense	c.1612	p.R538C	1.000	superfamily_FYVE/PHD zinc finger	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	126	7	5.26	44	26	37.14	18	29	61.70
U2AF1	0	genome.wustl.edu	36	21	43397525	43397525	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	21	43397525	43397525	G	T	SNP	U2AF1	NM_001025203.1	human	genbank	54_36p	-1	reviewed	missense	c.101	p.S34Y	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors	142	1	0.70	19	16	45.71	67	66	49.62
NIPSNAP1	0	genome.wustl.edu	36	22	28296426	28296426	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	22	28296426	28296426	T	C	SNP	NIPSNAP1	NM_003634.2	human	genbank	54_36p	-1	reviewed	missense	c.194	p.K65R	1.000	NULL	HMMPfam_NIPSNAP	-	no_errors	764	20	2.55	100	74	42.53	19	12	38.71
BCHE	0	genome.wustl.edu	36	3	167031170	167031170	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2882-03A-01W-0761-09	TCGA-AB-2882-11A-01W-0732-08	G	G	G	-	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b94e2b78-8092-49af-9c9e-7fd612b89793	22830365-9194-4c33-98d3-294740f281eb	3	167031170	167031170	G	-	DEL	BCHE	NM_000055.2	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.346	p.L116fs	0.974	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,HMMPfam_AChE_tetra,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_SSF53474	-	no_errors	128	0	0.00	83	33	28.45	0	0	0.00