Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
FAM47B	0	genome.wustl.edu	36	X	34872429	34872429	+	Silent	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	X	34872429	34872429	C	T	SNP	FAM47B	NM_152631.1	human	genbank	54_36p	+1	predicted	silent	c.1560	p.V520	0.000	NULL	NULL	-	no_errors	66	2	2.94	38	43	53.09	NA	NA	NA
HLA-B	0	genome.wustl.edu	36	6	31432896	31432896	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	6	31432896	31432896	G	C	SNP	HLA-B	NM_005514.6	human	genbank	54_36p	-1	reviewed	missense	c.19	p.R7G	0.000	NULL	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors	60	0	0.00	48	15	23.44	1199	923	43.50
ASB15	0	genome.wustl.edu	36	7	123056342	123056342	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	7	123056342	123056342	C	T	SNP	ASB15	NM_080928.3	human	genbank	54_36p	+1	validated	missense	c.1058	p.A353V	0.997	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_SOCS_box,HMMSmart_SM00253,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors	111	1	0.89	79	37	31.62	NA	NA	NA
CPNE3	0	genome.wustl.edu	36	8	87626150	87626150	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	8	87626150	87626150	A	G	SNP	CPNE3	NM_003909.3	human	genbank	54_36p	+1	reviewed	missense	c.700	p.T234A	1.000	HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors	117	1	0.85	66	25	27.47	42	26	38.24
BRMS1	0	genome.wustl.edu	36	11	65865367	65865367	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	11	65865367	65865367	G	A	SNP	BRMS1	NM_001024957.1	human	genbank	54_36p	-1	reviewed	nonsense	c.244	p.R82*	1.000	HMMPfam_Sds3	HMMPfam_Sds3	-	no_errors	54	0	0.00	34	10	22.73	31	6	16.22
DDX23	0	genome.wustl.edu	36	12	47525672	47525672	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	12	47525672	47525672	C	T	SNP	DDX23	NM_004818.2	human	genbank	54_36p	-1	reviewed	missense	c.161	p.R54Q	0.853	NULL	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	74	1	1.32	39	16	29.09	52	35	40.23
GPR183	0	genome.wustl.edu	36	13	98745483	98745483	+	Silent	SNP	A	A	G			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	13	98745483	98745483	A	G	SNP	GPR183	NM_004951.4	human	genbank	54_36p	-1	reviewed	silent	c.918	p.F306	0.972	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	124	1	0.79	78	33	29.73	584	532	47.63
LOC388076	0	genome.wustl.edu	36	15	19941872	19941872	+	Silent	SNP	G	G	A			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	15	19941872	19941872	G	A	SNP	LOC388076	XM_931016.1	human	genbank	54_36p	-1	model	silent	c.339	p.Y113	1.000	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene	190	0	0.00	123	42	25.30	745	0	0.00
KIT	0	genome.wustl.edu	36	4	55284528	55284529	+	In_Frame_Ins	INS	-	-	CTTCTT			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	-	-	-	CTTCTT	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	4	55284528	55284529	-	CTTCTT	INS	KIT	NM_000222.2	human	genbank	54_36p	+1	reviewed	in_frame_ins	c.1253_1254	p.419in_frame_insFF	0.002:0.002	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
ARHGAP18	0	genome.wustl.edu	36	6	129992243	129992246	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	TCTT	TCTT	TCTT	-	TCTT	TCTT	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c0c5cc35-b82e-4843-abd2-59739c85097d	22b0fe6d-f07e-4e6c-b9c6-1a8d4c928685	6	129992243	129992246	TCTT	-	DEL	ARHGAP18	NM_033515.2	human	genbank	54_36p	-1	validated	frame_shift_del	c.734_731	p.K244fs	0.979:0.998:1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA