Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ENSG00000211459	0	genome.wustl.edu	36	MT	651	651	+	RNA	SNP	A	A	G			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	MT	651	651	A	G	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	1957	73	3.57	551	524	48.16	NA	NA	NA
ZNF275	0	genome.wustl.edu	36	X	152264227	152264227	+	Silent	SNP	A	A	G			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	X	152264227	152264227	A	G	SNP	ZNF275	NM_001080485.2	human	genbank	54_36p	+1	validated	silent	c.255	p.L85	0.000	HMMSmart_SM00349	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	96	3	2.97	81	63	43.15	0	6	100.00
PLA2G2D	0	genome.wustl.edu	36	1	20313229	20313229	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	1	20313229	20313229	G	A	SNP	PLA2G2D	NM_012400.2	human	genbank	54_36p	-1	provisional	missense	c.403	p.R135W	0.037	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,PatternScan_PA2_HIS,PatternScan_PA2_ASP,superfamily_PhospholipaseA2	-	no_errors	58	5	7.81	43	36	44.44	NA	NA	NA
MAGI3	0	genome.wustl.edu	36	1	113924725	113924725	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	1	113924725	113924725	G	A	SNP	MAGI3	NM_152900.1	human	genbank	54_36p	+1	validated	missense	c.472	p.V158M	1.000	HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540	-	no_errors	211	7	3.17	119	74	38.34	NA	NA	NA
APOB	0	genome.wustl.edu	36	2	21088951	21088951	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	2	21088951	21088951	C	T	SNP	APOB	NM_000384.2	human	genbank	54_36p	-1	reviewed	missense	c.4294	p.D1432N	0.542	NULL	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain	-	no_errors	198	4	1.97	139	87	37.83	NA	NA	NA
NLRC4	0	genome.wustl.edu	36	2	32316794	32316794	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	2	32316794	32316794	A	G	SNP	NLRC4	NM_021209.3	human	genbank	54_36p	-1	validated	missense	c.2432	p.I811T	0.898	superfamily_RNI-like	HMMPfam_CARD,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	177	4	2.21	95	63	38.65	15	9	37.50
GPR128	0	genome.wustl.edu	36	3	101856631	101856631	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	3	101856631	101856631	G	A	SNP	GPR128	NM_032787.1	human	genbank	54_36p	+1	provisional	missense	c.1642	p.A548T	0.890	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	164	3	1.80	90	71	43.29	NA	NA	NA
SYNPO2	0	genome.wustl.edu	36	4	120172000	120172000	+	Silent	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	4	120172000	120172000	G	A	SNP	SYNPO2	NM_133477.1	human	genbank	54_36p	+1	validated	silent	c.2622	p.Q874	0.997	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors	90	3	3.19	50	37	42.05	NA	NA	NA
GPX2	0	genome.wustl.edu	36	14	64476280	64476280	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	14	64476280	64476280	G	C	SNP	GPX2	NM_002083.2	human	genbank	54_36p	-1	reviewed	missense	c.252	p.N84K	1.000	HMMPfam_GSHPx,superfamily_Thioredoxin-like	HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2,superfamily_Thioredoxin-like	-	pseudogene	171	3	1.72	102	71	40.80	2	3	60.00
EHD2	0	genome.wustl.edu	36	19	52921252	52921252	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	19	52921252	52921252	C	T	SNP	EHD2	NM_014601.3	human	genbank	54_36p	+1	reviewed	missense	c.874	p.R292C	1.000	NULL	HMMSmart_SM00027,HMMPfam_Dynamin_N,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	254	11	4.14	107	96	46.83	6	5	45.45
FLT3	0	genome.wustl.edu	36	13	27506262	27506263	+	In_Frame_Ins	INS	-	-	CATATTCTCTGAAATCAACGTATC			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	-	-	-	CATATTCTCTGAAATCAACGTATC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	779697fe-899a-4bfb-a1d3-44a847487b6b	927d14ba-cb7d-4d0d-9294-e328023db1b8	13	27506262	27506263	-	CATATTCTCTGAAATCAACGTATC	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1794_1793	p.YDL599in_frame_insIR*	0.789:0.821	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA