Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CYB	0	genome.wustl.edu	36	MT	15651	15651	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	MT	15651	15651	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.904	p.A302T	NULL	HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region	3556	95	2.58	3813	714	15.61	NA	NA	NA
KCTD9P2	0	genome.wustl.edu	36	X	104537558	104537558	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	X	104537558	104537558	C	T	SNP	KCTD9P2	ENST00000313275	human	ensembl	54_36p	+1	known	silent	c.354	p.H118	1.000	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	-	no_errors	59	6	9.23	15	107	87.70	8	0	0.00
DNMT3A	0	genome.wustl.edu	36	2	25316790	25316790	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	2	25316790	25316790	C	T	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2207	p.R736H	1.000	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	47	6	11.32	34	26	41.27	25	31	55.36
DNMT3A	0	genome.wustl.edu	36	2	25318080	25318080	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	2	25318080	25318080	C	A	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.1937	p.G646V	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	30	1	3.23	60	36	37.50	27	14	34.15
CYBRD1	0	genome.wustl.edu	36	2	172119343	172119343	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	2	172119343	172119343	G	T	SNP	CYBRD1	ENST00000375252	human	ensembl	54_36p	+1	known	missense	c.412	p.D138Y	0.981	NULL	HMMPfam_Cytochrom_B561,PatternScan_SPASE_I_1	-	no_errors	66	9	12.00	130	109	45.23	63	29	31.52
KCNH2	0	genome.wustl.edu	36	7	150280827	150280827	+	Silent	SNP	T	T	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	7	150280827	150280827	T	G	SNP	KCNH2	NM_000238.2	human	genbank	54_36p	-1	reviewed	silent	c.1176	p.A392	0.899	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors	42	3	6.67	43	41	47.67	1	1	50.00
LOC100132672	0	genome.wustl.edu	36	9	68791992	68791992	+	RNA	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	9	68791992	68791992	A	G	SNP	LOC100132672	XR_038504.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene	24	0	0.00	121	27	18.00	NA	NA	NA
C9orf43	0	genome.wustl.edu	36	9	115225484	115225484	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	9	115225484	115225484	A	G	SNP	C9orf43	NM_152786.1	human	genbank	54_36p	+1	predicted	missense	c.541	p.T181A	0.000	NULL	NULL	-	no_errors	101	8	7.34	120	106	46.09	NA	NA	NA
ABCG4	0	genome.wustl.edu	36	11	118536561	118536561	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	11	118536561	118536561	A	G	SNP	ABCG4	NM_022169.1	human	genbank	54_36p	+1	reviewed	missense	c.1700	p.Y567C	1.000	HMMPfam_ABC2_membrane	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC2_membrane,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	86	3	3.33	135	66	32.84	NA	NA	NA
MGAT4C	0	genome.wustl.edu	36	12	84897866	84897866	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	12	84897866	84897866	G	T	SNP	MGAT4C	NM_013244.3	human	genbank	54_36p	-1	validated	missense	c.769	p.L257I	1.000	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors	37	3	7.50	72	65	46.76	NA	NA	NA
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T	rs121913502		TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	15	88432938	88432938	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	69	2	2.82	59	51	46.36	93	82	46.86
USP9X	0	genome.wustl.edu	36	X	40912334	40912335	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-	-	CG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	X	40912334	40912335	-	CG	INS	USP9X	NM_001039590.2	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.2555_2556	p.V853fs	1.000:1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors	85	0	0.00	217	0	0.00	9	0	0.00
FLT3	0	genome.wustl.edu	36	13	27506257	27506258	+	In_Frame_Ins	INS	-	-	CATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTTAGGAGCCGGTCC			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-	-	CATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTTAGGAGCCGGTCC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7791e140-fe03-44d0-8250-47826ea993df	c98ddb47-f34c-4646-a434-5f8e6f6b5853	13	27506257	27506258	-	CATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTTAGGAGCCGGTCC	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1799_1798	p.600in_frame_insGTGS*DNEYFYVDFREYEY	1.000:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA