Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MIR891A	0	genome.wustl.edu	36	X	144917082	144917082	+	RNA	SNP	G	G	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	X	144917082	144917082	G	T	SNP	MIRN891A	ENST00000401237	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	312	41	11.61	376	280	42.62	NA	NA	NA
PLCH2	0	genome.wustl.edu	36	1	2408210	2408210	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	1	2408210	2408210	C	T	SNP	PLCH2	NM_014638.2	human	genbank	54_36p	+1	provisional	missense	c.821	p.A274V	0.000	HMMPfam_efhand_like,superfamily_EF-hand	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors	67	7	9.46	39	38	49.35	4	0	0.00
LOC645949	0	genome.wustl.edu	36	2	21787609	21787609	+	RNA	SNP	T	T	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	2	21787609	21787609	T	A	SNP	LOC645949	XR_040569.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	no_errors	217	37	14.51	364	345	48.66	NA	NA	NA
TTN	0	genome.wustl.edu	36	2	179110367	179110367	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	2	179110367	179110367	C	T	SNP	TTN	NM_133378.3	human	genbank	54_36p	-1	reviewed	missense	c.92108	p.S30703N	0.999	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,PatternScan_RCC1_2,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	219	45	17.05	348	354	50.43	NA	NA	NA
IDH1	0	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	2	208821358	208821358	G	A	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	270	38	12.34	197	141	41.59	22	30	57.69
ZNF721	0	genome.wustl.edu	36	4	427878	427878	+	Silent	SNP	T	T	C			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	4	427878	427878	T	C	SNP	ZNF721	NM_133474.2	human	genbank	54_36p	-1	validated	silent	c.378	p.Q126	0.017	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	260	19	6.79	267	220	45.17	3	0	0.00
FBXL7	0	genome.wustl.edu	36	5	15989890	15989890	+	Silent	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	5	15989890	15989890	C	T	SNP	FBXL7	NM_012304.3	human	genbank	54_36p	+1	reviewed	silent	c.1071	p.I357	1.000	HMMSmart_SM00367,superfamily_RNI-like	HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00367,superfamily_RNI-like	-	no_errors	184	25	11.85	206	169	44.47	NA	NA	NA
GPR98	0	genome.wustl.edu	36	5	89961074	89961074	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	5	89961074	89961074	G	A	SNP	GPR98	NM_032119.3	human	genbank	54_36p	+1	reviewed	missense	c.1801	p.D601N	1.000	NULL	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors	232	31	11.79	334	226	40.36	NA	NA	NA
OR5AR1	0	genome.wustl.edu	36	11	56188275	56188275	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	11	56188275	56188275	G	A	SNP	OR5AR1	NM_001004730.1	human	genbank	54_36p	+1	provisional	missense	c.538	p.E180K	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	214	34	13.71	539	426	44.05	NA	NA	NA
RIN1	0	genome.wustl.edu	36	11	65859692	65859692	+	Silent	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	11	65859692	65859692	G	A	SNP	RIN1	NM_004292.2	human	genbank	54_36p	-1	validated	silent	c.420	p.D140	1.000	HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00252,HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204),superfamily_SH2 domain	-	no_errors	199	37	15.68	86	79	47.88	5	1	16.67
LOC441644	0	genome.wustl.edu	36	12	93058231	93058231	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	12	93058231	93058231	C	T	SNP	LOC441644	XM_001714973.1	human	genbank	54_36p	+1	model	missense	c.158	p.T53M	1.000	HMMPfam_ELM2	HMMPfam_ELM2	-	no_errors	101	14	12.17	149	95	38.93	NA	NA	NA
KIAA0226L	0	genome.wustl.edu	36	13	45844149	45844149	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56189e90-e223-4523-b613-10df5b2eb23d	4992751b-33fc-4136-bcbc-564c6854cef3	13	45844149	45844149	C	T	SNP	C13orf18	NM_025113.2	human	genbank	54_36p	-1	validated	missense	c.463	p.A155T	0.001	NULL	NULL	-	no_errors	282	35	10.97	387	309	44.21	NA	NA	NA