Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC100130211	0	genome.wustl.edu	36	X	85302265	85302265	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	X	85302265	85302265	C	T	SNP	LOC100130211	XM_001717632.1	human	genbank	54_36p	-1	model	missense	c.736	p.G246S	1.000	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	pseudogene	306	10	3.16	105	709	87.10	NA	NA	NA
RAB25	0	genome.wustl.edu	36	1	154302405	154302405	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	1	154302405	154302405	C	A	SNP	RAB25	NM_020387.2	human	genbank	54_36p	+1	provisional	missense	c.123	p.S41R	0.993	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors	718	13	1.78	245	179	42.22	NA	NA	NA
MAGI1	0	genome.wustl.edu	36	3	65391533	65391533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	3	65391533	65391533	C	T	SNP	MAGI1	NM_001033057.1	human	genbank	54_36p	-1	reviewed	missense	c.1427	p.R476Q	1.000	HMMPfam_PDZ,superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	743	12	1.59	1076	843	43.88	NA	NA	NA
PDK4	0	genome.wustl.edu	36	7	95055034	95055034	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	7	95055034	95055034	G	A	SNP	PDK4	NM_002612.3	human	genbank	54_36p	-1	reviewed	missense	c.811	p.P271S	0.859	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain	-	no_errors	384	15	3.76	571	425	42.63	NA	NA	NA
CBL	0	genome.wustl.edu	36	11	118654090	118654090	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	11	118654090	118654090	A	G	SNP	CBL	NM_005188.2	human	genbank	54_36p	+1	reviewed	missense	c.1100	p.Q367R	1.000	superfamily_SSF57850	HMMPfam_UBA,HMMSmart_RING,HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_UBA,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF47473,superfamily_SSF55550,superfamily_SSF57850	-	no_errors	138	2	1.43	86	208	70.75	NA	NA	NA
GABRG3	0	genome.wustl.edu	36	15	25446355	25446355	+	Silent	SNP	G	G	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	15	25446355	25446355	G	A	SNP	GABRG3	ENST00000333743	human	ensembl	54_36p	+1	known	silent	c.1047	p.T349	0.011	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors	892	29	3.14	989	833	45.69	NA	NA	NA
DLX3	0	genome.wustl.edu	36	17	45423898	45423898	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	17	45423898	45423898	G	T	SNP	DLX3	NM_005220.2	human	genbank	54_36p	-1	reviewed	missense	c.846	p.N282K	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors	585	12	2.01	206	146	41.36	NA	NA	NA
SUPT5H	0	genome.wustl.edu	36	19	44641493	44641493	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	19	44641493	44641493	G	C	SNP	SUPT5H	NM_003169.2	human	genbank	54_36p	+1	validated	missense	c.398	p.R133P	1.000	NULL	HMMPfam_Supt5,HMMPfam_KOW,HMMSmart_SM00739,HMMSmart_SM00738,superfamily_Translation proteins SH3-like domain	-	no_errors	1241	45	3.50	783	521	39.83	NA	NA	NA
HNRNPUL1	0	genome.wustl.edu	36	19	46478923	46478923	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	19	46478923	46478923	C	T	SNP	HNRNPUL1	NM_007040.3	human	genbank	54_36p	+1	reviewed	missense	c.902	p.S301F	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_SPRY,HMMSmart_SM00449,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_SAP domain	-	no_errors	516	6	1.15	537	430	44.42	NA	NA	NA
TRPC4AP	0	genome.wustl.edu	36	20	33144232	33144232	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	20	33144232	33144232	G	A	SNP	TRPC4AP	NM_015638.2	human	genbank	54_36p	-1	validated	missense	c.14	p.P5L	0.997	NULL	NULL	-	no_errors	129	1	0.76	77	63	43.75	NA	NA	NA
GPBP1	0	genome.wustl.edu	36	5	56578691	56578692	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	-	-	-	A	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	5	56578691	56578692	-	A	INS	GPBP1	NM_022913.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.696_697	p.V233fs	1.000:1.000	NULL	NULL	-	no_errors	168	0	0.00	239	124	34.16	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCAG			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	-	-	-	TCAG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	5	170770152	170770153	-	TCAG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
WT1	0	genome.wustl.edu	36	11	32374422	32374423	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	AT	AT	AT	-	AT	AT	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b385b03f-4ee1-4be9-9291-9b5fdfd66384	baa70711-9504-4ebc-8e86-a870629d4161	11	32374422	32374423	AT	-	DEL	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1206_1205	p.Y402fs	1.000:1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	0	6	1.60	0	170	35.20	NA	NA	NA