Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
AMOT	0	genome.wustl.edu	36	X	111945310	111945310	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	X	111945310	111945310	A	T	SNP	AMOT	NM_133265.1	human	genbank	54_36p	-1	reviewed	missense	c.97	p.S33T	0.996	NULL	NULL	-	no_errors	1815	15	0.82	926	477	33.97	1	0	0.00
IDH1	0	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	2	208821358	208821358	G	A	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	1083	14	1.28	429	197	31.47	49	56	53.33
RPL9	0	genome.wustl.edu	36	4	39135654	39135654	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	4	39135654	39135654	T	C	SNP	RPL9	NM_000661.4	human	genbank	54_36p	-1	reviewed	missense	c.205	p.T69A	1.000	HMMPfam_Ribosomal_L6,superfamily_Ribosomal protein L6	PatternScan_RIBOSOMAL_L6_2,HMMPfam_Ribosomal_L6,superfamily_Ribosomal protein L6	-	no_errors	487	17	3.36	205	89	30.27	18	13	41.94
PARP2	0	genome.wustl.edu	36	14	19888609	19888609	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	14	19888609	19888609	A	T	SNP	PARP2	NM_005484.1	human	genbank	54_36p	+1	reviewed	nonsense	c.448	p.R150*	1.000	HMMPfam_WGR,HMMSmart_SM00773	HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase,PatternScan_CPSASE_2,HMMPfam_WGR,HMMSmart_SM00773,HMMPfam_PARP,PatternScan_CASPASE_HIS,superfamily_ADP-ribosylation	-	no_errors	1825	33	1.78	675	336	33.14	23	1	4.17
AGBL1	0	genome.wustl.edu	36	15	84591961	84591961	+	Silent	SNP	G	G	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	15	84591961	84591961	G	T	SNP	AGBL1	NM_152336.2	human	genbank	54_36p	+1	validated	silent	c.444	p.L148	0.993	superfamily_ARM repeat	HMMPfam_Peptidase_M14,superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases	-	no_errors	1386	29	2.05	659	287	30.27	NA	NA	NA
MPND	0	genome.wustl.edu	36	19	4305113	4305113	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	19	4305113	4305113	C	T	SNP	MPND	NM_032868.3	human	genbank	54_36p	+1	provisional	missense	c.736	p.R246C	1.000	NULL	HMMPfam_Mov34,superfamily_JAB1/MPN domain	-	no_errors	1609	35	2.13	157	103	39.62	26	2	7.14
KLK7	0	genome.wustl.edu	36	19	56172720	56172720	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	19	56172720	56172720	G	A	SNP	KLK7	NM_005046.2	human	genbank	54_36p	-1	reviewed	nonsense	c.646	p.Q216*	0.616	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	224	8	3.45	118	73	38.22	NA	NA	NA
SLC24A3	0	genome.wustl.edu	36	20	19610539	19610539	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	20	19610539	19610539	A	G	SNP	SLC24A3	NM_020689.3	human	genbank	54_36p	+1	validated	missense	c.805	p.T269A	0.998	NULL	HMMPfam_Na_Ca_ex	-	no_errors	2254	18	0.79	398	196	33.00	3	1	25.00
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	4465a0df-868c-46ee-9087-c39f64ffd3ca	844d8005-5ba1-4480-b5b2-939b59f155c7	5	170770152	170770153	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA