Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
NYX	0	genome.wustl.edu	36	X	41218979	41218979	+	Silent	SNP	C	C	T			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	X	41218979	41218979	C	T	SNP	NYX	NM_022567.2	human	genbank	54_36p	+1	reviewed	silent	c.1329	p.S443	0.000	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors	134	2	1.46	103	95	47.74	NA	NA	NA
FLG	0	genome.wustl.edu	36	1	150548358	150548358	+	Silent	SNP	G	G	A			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	1	150548358	150548358	G	A	SNP	FLG	NM_002016.1	human	genbank	54_36p	-1	provisional	silent	c.5628	p.D1876	0.000	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors	360	1	0.28	288	252	46.58	NA	NA	NA
FAM5C	0	genome.wustl.edu	36	1	188333917	188333917	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	1	188333917	188333917	G	A	SNP	FAM5C	NM_199051.1	human	genbank	54_36p	-1	provisional	missense	c.2155	p.R719C	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	1122	4	0.36	692	633	47.70	NA	NA	NA
PCDHGA9	0	genome.wustl.edu	36	5	140763027	140763027	+	Silent	SNP	C	C	T			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	5	140763027	140763027	C	T	SNP	PCDHGA9	NM_018921.2	human	genbank	54_36p	+1	reviewed	silent	c.324	p.V108	0.000	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors	236	1	0.42	214	119	35.74	NA	NA	NA
SLC37A2	0	genome.wustl.edu	36	11	124460766	124460766	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	11	124460766	124460766	G	A	SNP	SLC37A2	NM_198277.1	human	genbank	54_36p	+1	validated	missense	c.1411	p.V471I	0.020	superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors	529	2	0.38	433	401	48.08	2	2	50.00
PA2G4	0	genome.wustl.edu	36	12	54787269	54787269	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	12	54787269	54787269	G	A	SNP	PA2G4	NM_006191.2	human	genbank	54_36p	+1	reviewed	missense	c.355	p.A119T	1.000	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,PatternScan_MAP_2	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,PatternScan_MAP_2,superfamily_SSF46785	-	no_errors	577	12	2.04	411	371	47.44	52	61	53.98
HERC1	0	genome.wustl.edu	36	15	61753611	61753611	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	15	61753611	61753611	C	T	SNP	HERC1	NM_003922.3	human	genbank	54_36p	-1	reviewed	missense	c.7829	p.G2610E	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00320,HMMPfam_SPRY,PatternScan_ARGINASE_2,PatternScan_PHOSPHOPANTETHEINE,superfamily_RCC1/BLIP-II,superfamily_WD40 repeat-like,HMMSmart_SM00449,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	1160	9	0.77	661	576	46.49	26	14	35.00
PLIN1	0	genome.wustl.edu	36	15	88010109	88010109	+	Silent	SNP	G	G	T			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	15	88010109	88010109	G	T	SNP	PLIN	NM_002666.1	human	genbank	54_36p	-1	reviewed	silent	c.1278	p.V426	0.001	NULL	HMMPfam_Perilipin	-	no_errors	185	4	2.12	127	119	48.37	NA	NA	NA
PKD1L2	0	genome.wustl.edu	36	16	79798626	79798626	+	Silent	SNP	G	G	A			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	16	79798626	79798626	G	A	SNP	PKD1L2	NM_001076780.1	human	genbank	54_36p	-1	reviewed	silent	c.876	p.D292	0.997	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors	679	2	0.29	425	299	41.30	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506255	27506256	+	In_Frame_Ins	INS	-	-	ATCATATTCATATTCTCTGAA			TCGA-AB-2998-03A-01D-0739-09	TCGA-AB-2998-11A-01D-0739-09	-	-	-	ATCATATTCATATTCTCTGAA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	9aae9f69-be50-4c20-b084-a5fdc939a7df	86091afe-5087-48c5-8511-ed4320df0d01	13	27506255	27506256	-	ATCATATTCATATTCTCTGAA	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1801_1800	p.600in_frame_insFREYEYD	1.000:0.998	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA