Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
TCEAL3	0	genome.wustl.edu	36	X	102751098	102751098	+	Silent	SNP	A	A	G			TCGA-AB-3000-03A-01D-0739-09	TCGA-AB-3000-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d9c2b87-cd6b-4a73-b9a7-9be8a4f37fd3	c9e8fc7e-5ba0-424a-8659-433c2a7470ea	X	102751098	102751098	A	G	SNP	TCEAL3	NM_001006933.1	human	genbank	54_36p	+1	reviewed	silent	c.450	p.Q150	1.000	HMMPfam_TFA	HMMPfam_TFA	-	no_errors	839	161	16.02	393	160	28.83	16	0	0.00
CLCN6	0	genome.wustl.edu	36	1	11820095	11820095	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-3000-03A-01D-0739-09	TCGA-AB-3000-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d9c2b87-cd6b-4a73-b9a7-9be8a4f37fd3	c9e8fc7e-5ba0-424a-8659-433c2a7470ea	1	11820095	11820095	G	C	SNP	CLCN6	NM_001286.2	human	genbank	54_36p	+1	reviewed	missense	c.2247	p.Q749H	1.000	HMMPfam_CBS	HMMPfam_CBS,HMMSmart_SM00116,HMMPfam_Voltage_CLC,superfamily_Clc chloride channel,superfamily_CBS-domain	-	no_errors	1118	263	19.03	469	534	53.13	20	14	41.18
DYSF	0	genome.wustl.edu	36	2	71648884	71648884	+	Silent	SNP	C	C	T			TCGA-AB-3000-03A-01D-0739-09	TCGA-AB-3000-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d9c2b87-cd6b-4a73-b9a7-9be8a4f37fd3	c9e8fc7e-5ba0-424a-8659-433c2a7470ea	2	71648884	71648884	C	T	SNP	DYSF	NM_003494.1	human	genbank	54_36p	+1	reviewed	silent	c.2718	p.D906	0.981	HMMSmart_SM00693	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors	1456	383	20.76	379	319	45.64	17	16	48.48
LOC344875	0	genome.wustl.edu	36	3	15181516	15181516	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3000-03A-01D-0739-09	TCGA-AB-3000-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d9c2b87-cd6b-4a73-b9a7-9be8a4f37fd3	c9e8fc7e-5ba0-424a-8659-433c2a7470ea	3	15181516	15181516	C	A	SNP	LOC344875	XM_497913.1	human	genbank	54_36p	-1	model	missense	c.2954	p.C985F	1.000	HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	-	no_errors	1399	351	20.01	669	546	44.94	NA	NA	NA
CEBPA	0	genome.wustl.edu	36	19	38484986	38484986	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-3000-03A-01D-0739-09	TCGA-AB-3000-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d9c2b87-cd6b-4a73-b9a7-9be8a4f37fd3	c9e8fc7e-5ba0-424a-8659-433c2a7470ea	19	38484986	38484986	C	A	SNP	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	nonsense	c.175	p.E59*	1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	0	1	100.00	1	0	0.00	177	231	56.20
CEBPA	0	genome.wustl.edu	36	19	38484230	38484231	+	In_Frame_Ins	INS	-	-	CCA			TCGA-AB-3000-03A-01D-0739-09	TCGA-AB-3000-11A-01D-0739-09	-	-	-	CCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d9c2b87-cd6b-4a73-b9a7-9be8a4f37fd3	c9e8fc7e-5ba0-424a-8659-433c2a7470ea	19	38484230	38484231	-	CCA	INS	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.931_930	p.310in_frame_insW	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	110	21	16.03	76	51	40.16	327	211	39.22