Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
USP9X	0	genome.wustl.edu	36	X	40895240	40895240	+	Silent	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	X	40895240	40895240	G	A	SNP	USP9X	NM_001039590.2	human	genbank	54_36p	+1	reviewed	silent	c.1749	p.A583	0.996	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors	703	1	0.14	326	120	26.91	58	0	0.00
AFF2	0	genome.wustl.edu	36	X	147699135	147699135	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	X	147699135	147699135	G	A	SNP	AFF2	NM_002025.2	human	genbank	54_36p	+1	validated	missense	c.1085	p.R362Q	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	1422	7	0.49	387	121	23.82	252	0	0.00
CACNA1E	0	genome.wustl.edu	36	1	180021175	180021175	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	1	180021175	180021175	C	G	SNP	CACNA1E	NM_000721.2	human	genbank	54_36p	+1	reviewed	missense	c.5677	p.Q1893E	1.000	HMMPfam_Ca_chan_IQ	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors	1466	6	0.41	878	377	30.04	NA	NA	NA
LOC26010	0	genome.wustl.edu	36	2	201045842	201045842	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	2	201045842	201045842	G	T	SNP	LOC26010	NM_001100422.1	human	genbank	54_36p	+1	validated	missense	c.1103	p.S368I	1.000	HMMPfam_DUF1387	HMMPfam_DUF1387	-	no_errors	980	2	0.20	514	113	18.02	8	2	20.00
SI	0	genome.wustl.edu	36	3	166213499	166213499	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	3	166213499	166213499	G	T	SNP	SI	NM_001041.2	human	genbank	54_36p	-1	validated	missense	c.4025	p.T1342K	0.808	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors	987	4	0.40	510	227	30.80	NA	NA	NA
C5orf25	0	genome.wustl.edu	36	5	175649773	175649773	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	5	175649773	175649773	C	T	SNP	C5orf25	NM_198567.4	human	genbank	54_36p	+1	validated	missense	c.583	p.R195C	0.021	NULL	NULL	-	no_errors	2500	13	0.52	693	305	30.53	6	17	73.91
RUFY1	0	genome.wustl.edu	36	5	178958402	178958402	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	5	178958402	178958402	C	G	SNP	RUFY1	NM_025158.1	human	genbank	54_36p	+1	validated	missense	c.1735	p.L579V	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_RUN,HMMSmart_SM00593,superfamily_FYVE/PHD zinc finger	-	no_errors	752	5	0.66	678	156	18.68	44	13	22.81
HIVEP1	0	genome.wustl.edu	36	6	12230515	12230515	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	6	12230515	12230515	T	C	SNP	HIVEP1	NM_002114.2	human	genbank	54_36p	+1	validated	missense	c.2501	p.L834S	0.997	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	1407	3	0.21	233	108	31.67	1	2	66.67
WAC	0	genome.wustl.edu	36	10	28945298	28945298	+	Splice_Site	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	10	28945298	28945298	G	A	SNP	WAC	NM_016628.3	human	genbank	54_36p	+1	reviewed	splice_site	c.1746+1	e12+1	1.000	-	-	-	no_errors	746	4	0.53	685	303	30.67	6	1	14.29
C10orf118	0	genome.wustl.edu	36	10	115894360	115894360	+	Silent	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	10	115894360	115894360	G	A	SNP	C10orf118	NM_018017.2	human	genbank	54_36p	-1	validated	silent	c.1107	p.G369	0.950	NULL	superfamily_Prefoldin	-	no_errors	643	8	1.23	92	21	18.58	8	4	33.33
LUZP2	0	genome.wustl.edu	36	11	24716425	24716425	+	Splice_Site	SNP	G	G	C			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	11	24716425	24716425	G	C	SNP	LUZP2	NM_001009909.2	human	genbank	54_36p	+1	validated	splice_site	c.333+1	e4+1	0.994	-	-	-	no_errors	1289	5	0.39	1226	256	17.26	NA	NA	NA
LRIG3	0	genome.wustl.edu	36	12	57565928	57565928	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	12	57565928	57565928	C	T	SNP	LRIG3	NM_153377.1	human	genbank	54_36p	-1	provisional	missense	c.1196	p.R399H	0.998	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_RNI-like	-	no_errors	798	6	0.75	198	84	29.79	NA	NA	NA
PRPF8	0	genome.wustl.edu	36	17	1508697	1508697	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ab338ac-7a1e-4796-9464-d0e3218050ea	89734d2a-e63f-4255-8f4a-223187fa0daf	17	1508697	1508697	C	T	SNP	PRPF8	NM_006445.3	human	genbank	54_36p	-1	reviewed	missense	c.5249	p.G1750E	0.997	NULL	HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_PROCT,HMMPfam_U6-snRNA_bdg,HMMPfam_U5_2-snRNA_bdg,HMMPfam_RRM_4	-	no_errors	1403	6	0.43	394	95	19.43	294	102	25.76