Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
HMCN1	0	genome.wustl.edu	36	1	184361396	184361396	+	Silent	SNP	G	G	A			TCGA-AB-3008-03A-01D-0739-09	TCGA-AB-3008-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	21eeb895-fd30-4e1b-914e-f5b37df7d76c	f4101358-99f4-4e2d-9203-df902712e354	1	184361396	184361396	G	A	SNP	HMCN1	NM_031935.2	human	genbank	54_36p	+1	reviewed	silent	c.12537	p.T4179	0.818	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors	459	155	25.24	603	618	50.61	NA	NA	NA
KAT2B	0	genome.wustl.edu	36	3	20139255	20139255	+	Silent	SNP	G	G	A			TCGA-AB-3008-03A-01D-0739-09	TCGA-AB-3008-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	21eeb895-fd30-4e1b-914e-f5b37df7d76c	f4101358-99f4-4e2d-9203-df902712e354	3	20139255	20139255	G	A	SNP	KAT2B	NM_003884.4	human	genbank	54_36p	+1	reviewed	silent	c.1368	p.E456	1.000	NULL	HMMPfam_Acetyltransf_1,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_PCAF_N,superfamily_Acyl_CoA_acyltransferase,PatternScan_BROMODOMAIN_1	-	no_errors	981	271	21.65	503	385	43.26	39	18	31.58
C8orf84	0	genome.wustl.edu	36	8	74155955	74155955	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3008-03A-01D-0739-09	TCGA-AB-3008-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	21eeb895-fd30-4e1b-914e-f5b37df7d76c	f4101358-99f4-4e2d-9203-df902712e354	8	74155955	74155955	C	T	SNP	C8orf84	NM_153225.3	human	genbank	54_36p	-1	validated	missense	c.247	p.D83N	0.085	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,PatternScan_SMB_1	-	no_errors	729	289	28.39	350	373	51.52	NA	NA	NA
RSRC2	0	genome.wustl.edu	36	12	121567769	121567769	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3008-03A-01D-0739-09	TCGA-AB-3008-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	21eeb895-fd30-4e1b-914e-f5b37df7d76c	f4101358-99f4-4e2d-9203-df902712e354	12	121567769	121567769	C	G	SNP	RSRC2	NM_023012.4	human	genbank	54_36p	-1	validated	missense	c.560	p.R187T	1.000	NULL	NULL	-	no_errors	305	127	29.40	356	337	48.63	59	67	53.17
CEBPA	0	genome.wustl.edu	36	19	38484248	38484249	+	In_Frame_Ins	INS	-	-	CAA			TCGA-AB-3008-03A-01D-0739-09	TCGA-AB-3008-11A-01D-0739-09	-	-	-	CAA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	21eeb895-fd30-4e1b-914e-f5b37df7d76c	f4101358-99f4-4e2d-9203-df902712e354	19	38484248	38484249	-	CAA	INS	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.913_912	p.304in_frame_insL	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	63	9	12.50	122	42	25.61	387	298	43.50
LOC100132800	0	genome.wustl.edu	36	19	56786070	56786071	+	In_Frame_Ins	INS	-	-	CACCTG	rs113581628		TCGA-AB-3008-03A-01D-0739-09	TCGA-AB-3008-11A-01D-0739-09	-	-	-	CACCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	21eeb895-fd30-4e1b-914e-f5b37df7d76c	f4101358-99f4-4e2d-9203-df902712e354	19	56786070	56786071	-	CACCTG	INS	LOC100132800	XM_001724852.1	human	genbank	54_36p	+1	model	in_frame_ins	c.45_46	p.17in_frame_insHL	0.099:0.155	NULL	NULL	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA