Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
CYLC1	0	genome.wustl.edu	36	X	83015361	83015361	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	X	83015361	83015361	C	A	SNP	CYLC1	NM_021118.1	human	genbank	54_36p	+1	provisional	missense	c.989	p.T330K	0.027	NULL	NULL	-	no_errors	809	2	0.25	96	734	88.43	NA	NA	NA
CADM2	0	genome.wustl.edu	36	3	86197499	86197499	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	3	86197499	86197499	T	G	SNP	CADM2	NM_153184.2	human	genbank	54_36p	+1	validated	missense	c.1124	p.I375R	1.000	NULL	HMMSmart_4.1m,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors	953	3	0.31	500	378	42.95	NA	NA	NA
FRYL	0	genome.wustl.edu	36	4	48271967	48271967	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	4	48271967	48271967	T	C	SNP	FRYL	NM_015030.1	human	genbank	54_36p	-1	validated	missense	c.2770	p.M924V	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	390	0	0.00	582	308	34.61	18	11	37.93
GANC	0	genome.wustl.edu	36	15	40428888	40428888	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	15	40428888	40428888	G	A	SNP	GANC	NM_198141.2	human	genbank	54_36p	+1	reviewed	missense	c.2434	p.E812K	1.000	NULL	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,superfamily_(Trans)glycosidases	-	no_errors	1453	0	0.00	962	691	41.80	18	4	18.18
DHX34	0	genome.wustl.edu	36	19	52567974	52567974	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	19	52567974	52567974	G	A	SNP	DHX34	NM_014681.4	human	genbank	54_36p	+1	reviewed	missense	c.1942	p.V648I	0.984	NULL	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,PatternScan_RUBREDOXIN,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	203	0	0.00	87	67	43.51	8	1	11.11
TOP3B	0	genome.wustl.edu	36	22	20654724	20654724	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	22	20654724	20654724	C	T	SNP	TOP3B	NM_003935.3	human	genbank	54_36p	-1	reviewed	missense	c.439	p.V147M	0.984	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Toprim	PatternScan_TOPOISOMERASE_I_PROK,superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMSmart_SM00437,HMMSmart_SM00493,HMMPfam_Toprim,HMMPfam_Topoisom_bac	-	no_errors	596	0	0.00	265	187	41.37	15	15	50.00
EWSR1	0	genome.wustl.edu	36	22	28018596	28018596	+	Splice_Site	SNP	G	G	T			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	22	28018596	28018596	G	T	SNP	EWSR1	NM_005243.2	human	genbank	54_36p	+1	reviewed	splice_site	c.1164+1	e11+1	1.000	-	-	-	no_errors	1118	0	0.00	753	176	18.95	13	9	26.47
ETV6	0	genome.wustl.edu	36	12	11883488	11883500	+	Frame_Shift_Del	DEL	ATCGATCTCCTCA	ATCGATCTCCTCA	-			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	ATCGATCTCCTCA	ATCGATCTCCTCA	ATCGATCTCCTCA	-	ATCGATCTCCTCA	ATCGATCTCCTCA	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	12	11883488	11883500	ATCGATCTCCTCA	-	DEL	ETV6	NM_001987.4	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.311_323	p.Y104fs	0.995:0.881:0.929:0.995:0.992:1.000:1.000:1.000:1.000:1.000:0.984:1.000:1.000	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
SRRM2	0	genome.wustl.edu	36	16	2752700	2752701	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	-	-	-	TC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1ea97951-9a33-48eb-b1da-eab8566781bf	673432d1-fa29-474c-a1f2-b042f2a57cdb	16	2752700	2752701	-	TC	INS	SRRM2	NM_016333.3	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2170_2171	p.S724fs	1.000:1.000	NULL	HMMPfam_cwf21	-	no_errors	1993	0	0.00	1128	634	35.98	430	227	34.55