Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR51F2 119694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4843405 4843405 + Missense_Mutation SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TGCTGTTTCCATCTTCTACCT 0.478 27 49 CCDC82 79780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 96092275 96092275 + Missense_Mutation SNP A A T TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GTATAGTTTGAATTTAAAATG 0.343 32 81 OR8B4 283162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 124293908 124293908 + Missense_Mutation SNP G G A TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e ACTGTAGATCGAAGGGTTAAG 0.443 32 52 PYROXD1 79912 hgsc.bcm.edu;broad.mit.edu 37 12 21593340 21593340 + Silent SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TTCTCTTGGTAACAGCTTCTC 0.289 10 157 KRT6C 286887 hgsc.bcm.edu;broad.mit.edu 37 12 52865067 52865067 + Missense_Mutation SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GTGGGTCTGCATCTGGGACAG 0.507 51 105 THBS1 7057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 39883403 39883403 + Silent SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e ACAACTGTCCATTCCATTACA 0.448 64 126 IGSF6 10261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 21658638 21658638 + Missense_Mutation SNP G G T rs1454374 byFrequency TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TTTTGCACCCGTCCAAGCACA 0.512 53 68 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577532 7577532 + Missense_Mutation SNP G G A TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GGTGAGGATGGGCCTCCGGTT 0.577 40 17 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11132435 11132435 + Missense_Mutation SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GACGAAGGTCACCGCATGAAG 0.622 10 21 URI1 8725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 30503230 30503230 + Missense_Mutation SNP G G A rs140683632 TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TATGTCCCTCGCAAATCCATC 0.408 51 167 GDAP2 54834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 118441728 118441728 + Silent SNP C C A TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GTTCAGGTACCACAGGCTCCC 0.438 64 128 OR2W3 343171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248059264 248059264 + Missense_Mutation SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GTGTGTGGCTATCTGCAAGCC 0.607 20 61 SPTBN1 6711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 54880943 54880943 + Silent SNP C C G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e ACCTCATGCTCTGGATGGAGG 0.577 14 22 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152474871 152474871 + Missense_Mutation SNP C C T TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e CGTTTCTGGACGCTGACGGTA 0.443 54 210 UBR3 130507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170917865 170917865 + Missense_Mutation SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TCCATGGAAAAATGCTTACAG 0.363 109 188 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e ATAAGCATGACGACCTATGAT 0.393 31 68 BCL6 604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 187449545 187449545 + Missense_Mutation SNP A A G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e CTCCATCTGCAGGTACATAGC 0.537 20 51 WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 85600267 85600267 + Missense_Mutation SNP C C T TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GCGGCTGTTGCGCGGCAGGAG 0.582 26 35 RAPGEF2 9693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 160277114 160277114 + Silent SNP G G A TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GGAAACCGCCGGACTACAACG 0.612 10 26 PRDM9 56979 hgsc.bcm.edu;broad.mit.edu 37 5 23526956 23526956 + Missense_Mutation SNP C C T TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GGAGTGTGGGCGGGGCTTTAG 0.607 45 78 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32039776 32039776 + Missense_Mutation SNP C C T TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e CCCGTCTTTGCCTCCACAGAG 0.592 10 12 PLEKHA8 84725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 30092391 30092391 + Silent SNP C C T TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e AGGAAGAAATCCTAATGAAAA 0.308 21 106 ZMIZ2 83637 hgsc.bcm.edu;broad.mit.edu 37 7 44805131 44805131 + Missense_Mutation SNP C C A TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e CCCTTTGCCCCCCTGCAGCCC 0.687 30 13 ABCB4 5244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 87046828 87046828 + Missense_Mutation SNP T T C TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e CTGGTTCCTGTGGCCTGGGAG 0.428 21 43 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 109694416 109694416 + Missense_Mutation SNP T T C TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TGAGGCAATGTCCACACCATT 0.483 67 48 FAM118B 79607 broad.mit.edu;ucsc.edu 37 11 126126563 126126563 + Silent SNP C C G TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e TGGAGGCTGTCAAGCATAAAT 0.448 39 52 CSMD3 114788 broad.mit.edu;ucsc.edu 37 8 113304784 113304784 + Missense_Mutation SNP G G A TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e ATAGGTGGAGGATGGCTCCAC 0.403 59 243 KRT20 54474 broad.mit.edu;hgsc.bcm.edu 37 17 39034595 39034596 + Frame_Shift_Del DEL AG AG - TCGA-CS-5393-01A-01D-1468-08 TCGA-CS-5393-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ddc229a3-8c45-4736-9cff-6495193c3c55 53327aaf-fa9c-44ed-8c21-1c557f76186e GGTCTCCTCTAGAGTGTGCTCC 0.46 30 86