Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count RAG2 5897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 36614246 36614246 + Silent SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 GGACTCTTTGGGGAGTGTGTA 0.448 32 59 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 39454427 39454427 + Missense_Mutation SNP C C G rs148812741 TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CTAGGTCGCTCTAGGCCGAGA 0.388 20 37 TMX1 81542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 51713855 51713855 + Missense_Mutation SNP G G C TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CAAGGACTAAGAAGGACTTCA 0.353 42 57 TP53 7157 hgsc.bcm.edu;ucsc.edu 37 17 7578208 7578208 + Missense_Mutation SNP T T C TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CACCACACTATGTCGAAAAGT 0.542 13 38 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578550 7578550 + Missense_Mutation SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 GAGGGCAGGGGAGTACTGTAG 0.552 15 22 CASP14 23581 hgsc.bcm.edu;broad.mit.edu 37 19 15166067 15166067 + Missense_Mutation SNP G G A rs148526551 TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 TGCCTTGCACGTTTATTCCAC 0.547 4 50 WDR62 284403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36572456 36572456 + Missense_Mutation SNP A A T TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CACTGGCAGAAAAACATCTTC 0.473 19 90 WARS2 10352 hgsc.bcm.edu;ucsc.edu 37 1 119575933 119575933 + Silent SNP C C T rs77497675 byFrequency TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 GGTCTGATTTCGACATTTTGG 0.458 45 129 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 ATAAGCATGACGACCTATGAT 0.393 33 53 ABCA12 26154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 215823176 215823176 + Missense_Mutation SNP A A G TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 TAAACTGCTGATTCTAGAGTG 0.388 25 25 CCDC108 255101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219895549 219895549 + Silent SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 GCAGCTGGGCGCACTTGGCTG 0.637 9 30 FAM208A 23272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 56694986 56694986 + Missense_Mutation SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CAGTGCTGGAGGGATTTTCTG 0.299 16 54 EPHA5 2044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 66201659 66201659 + Missense_Mutation SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CCTGCAGGATGCATTAACCAG 0.403 45 85 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 126239329 126239329 + Missense_Mutation SNP A A G TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CCAGAAGGGTATGATGTGTCT 0.532 35 54 GEMIN5 25929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 154270897 154270897 + Missense_Mutation SNP T T C TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 TTGACTCTTTTGGTGTTGTCG 0.458 36 56 GRM4 2914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33996059 33996059 + Missense_Mutation SNP A A C TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 AGGATGATGTAGACTTTGGGC 0.607 56 80 RARRES2 5919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150037192 150037192 + Silent SNP A A G TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CACTCACCCCATTGGGCCTGA 0.567 237 389 KCNU1 157855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 36694322 36694322 + Silent SNP A A G TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 TTTATCTGCCAAAGATTCCCA 0.423 16 41 WWC3 55841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 10106879 10106879 + Missense_Mutation SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CTGCGGCAGCGGTTGGAGGAC 0.701 12 20 POLA1 5422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 24753561 24753561 + Missense_Mutation SNP T T A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 ACTGCTAGGTTTTTTCCTTGC 0.393 33 66 DCAF8L1 139425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 27999088 27999088 + Nonsense_Mutation SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CCACCGCATCGTGGACACATC 0.547 14 28 ZNF157 7712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 47272249 47272249 + Silent SNP A A C TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CTGAGAAGGCAACCCTCACGA 0.438 7 27 KCND1 3750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48826090 48826090 + Missense_Mutation SNP C C T TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 ACCGACACGGCGATGAAGAAG 0.642 11 8 OPCML 4978 broad.mit.edu;ucsc.edu 37 11 132527046 132527046 + Silent SNP C C T TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 AGCAGGTGTACGGACCTTCGT 0.502 20 61 IL17REL 400935 broad.mit.edu;ucsc.edu 37 22 50435799 50435799 + Silent SNP G G A TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CAGGCAGGGAGCTGTGACTTC 0.667 6 33 VPS13C 54832 broad.mit.edu;hgsc.bcm.edu 37 15 62302761 62302776 + Frame_Shift_Del DEL CATGTAGAGTTTTGCA CATGTAGAGTTTTGCA - TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CATAAGGATTCATGTAGAGTTTTGCAGAGGCTGATA 0.352 17 58 SMARCA4 6597 broad.mit.edu 37 19 11143993 11143993 + Missense_Mutation SNP C C T TCGA-CS-6667-01A-12D-2024-08 TCGA-CS-6667-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c14ddc3-acf0-4f96-bdb6-eb517d1da522 49ca5323-38a1-4786-b6aa-66de49b053a1 CCGAGCCCACCGCATCGGGCA 0.607 8 42