Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PYROXD2 84795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 100143599 100143599 + Nonsense_Mutation SNP G G A rs148254477 TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GCTGCATTTCGCCCAGCAGCT 0.567 27 228 CD82 3732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 44621761 44621761 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CCGACAAGAGCAGTTTCATCT 0.602 37 105 OR5L2 26338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55594988 55594988 + Missense_Mutation SNP G G A TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TAGGGTGCATGGTGCAATTCT 0.468 32 246 ST3GAL4 6484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 126278326 126278326 + Missense_Mutation SNP G G A TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CACACTCCTCGTCCTGGTAGC 0.547 31 75 POLR3B 55703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 106850924 106850924 + Missense_Mutation SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AGGCTTTGGGCGTTGCCTTGT 0.408 40 96 FARP1 10160 hgsc.bcm.edu;broad.mit.edu 37 13 99083304 99083304 + Missense_Mutation SNP C C T rs61730891 byFrequency TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AAGCACCTGGCGGCTCACCTG 0.587 6 127 SLC38A6 145389 hgsc.bcm.edu;broad.mit.edu 37 14 61451520 61451520 + Splice_Site SNP A A G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GTATTCAGACAGGTGAGTAAA 0.378 14 189 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 96757939 96757939 + Silent SNP A A G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TCACTTACCCATGTCGATAGG 0.348 18 157 SH3GL3 6457 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 84286924 84286924 + Missense_Mutation SNP A A G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AAAGAAGGGGACATCATTACA 0.423 10 66 SEC14L5 9717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 5061202 5061202 + Missense_Mutation SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GATGTCCTGACGGCTCTGCAC 0.662 20 36 NLRP13 126204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56422063 56422063 + Missense_Mutation SNP G G C rs144412914 by1000genomes TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AGCAAATGCTGTTCCATGCGT 0.458 41 41 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22211318 22211318 + Silent SNP G G A TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TGCCCCGGGCGTTCATGGCCT 0.627 11 19 TPR 7175 hgsc.bcm.edu;broad.mit.edu 37 1 186315342 186315342 + Missense_Mutation SNP C C G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CTTCCATCAACTTCTTTTCCA 0.353 12 177 PREX1 57580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 47305216 47305216 + Missense_Mutation SNP A A G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GCACTTGGGGACAGTGCTCAG 0.562 9 88 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179645981 179645981 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TGTTGTAACTCACTTTGTATC 0.353 27 73 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 ATAAGCATGACGACCTATGAT 0.393 42 103 STAG1 10274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 136117601 136117601 + Missense_Mutation SNP G G C TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TTTGGAAGGAGAGCCATCAGT 0.313 21 62 RBP1 5947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 139237308 139237308 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AGCCACGCCCCTCCTTCTCAC 0.597 10 110 C6 729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 41149347 41149347 + Silent SNP A A G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 ACTTACCTGAACATTTTTCCC 0.398 182 252 MAST4 375449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 66441064 66441064 + Missense_Mutation SNP A A C TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 ATTTCAACAGAGGGAGAGCAA 0.512 15 23 FEM1C 56929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 114860125 114860125 + Missense_Mutation SNP G G C TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TTATAGGCTGGATTAAATTTT 0.368 69 103 HLA-DQA2 3118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32713716 32713716 + Missense_Mutation SNP G G C rs35633399 TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GTGTTTCTGAGACCAGCTTCC 0.493 97 125 RFX6 222546 hgsc.bcm.edu;broad.mit.edu 37 6 117198501 117198501 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CCCAACTGTCCCCGGGGATCC 0.687 5 21 HOXA4 3201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 27169089 27169089 + Silent SNP G G A TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CGCCGGGTCAGGTATCGATTG 0.572 40 75 ACTL7B 10880 hgsc.bcm.edu;broad.mit.edu 37 9 111617665 111617665 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TGGACAGCAACGACTGGGACG 0.647 7 73 TMEM245 23731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 111853321 111853321 + Missense_Mutation SNP G G C TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TCTAAGAAACGTTCCTATTTC 0.502 9 75 MXRA5 25878 hgsc.bcm.edu;broad.mit.edu 37 X 3228182 3228182 + Missense_Mutation SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AGAAGAGAAACGCGTCCCAGG 0.627 52 86 TLR7 51284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 12906720 12906720 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GTCTAAAGAACGCCCTGGCCA 0.517 77 167 GLUD2 2747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 120181766 120181766 + Silent SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TCTTCGATCGCGGCGCCAGCA 0.647 16 134 SLITRK4 139065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 142717275 142717275 + Silent SNP G G A TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CAATCCCGTCGCTCAACTTCT 0.438 82 152 BGN 633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 152770259 152770259 + Missense_Mutation SNP C C T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TCTGTCACACCCACCTACAGC 0.622 79 102 ZNF41 7592 broad.mit.edu;ucsc.edu 37 X 47307606 47307606 + Missense_Mutation SNP T T G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 ACATATAGGGTTTTTCCCCAG 0.418 22 189 MRGPRX3 117195 broad.mit.edu;ucsc.edu 37 11 18158870 18158870 + Missense_Mutation SNP G G A TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TTCCCTTGTCGCGCTGACAGG 0.592 64 171 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78432402 78432405 + Frame_Shift_Del DEL AACA AACA - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TGTTCCAGTTAACATACAGGACCT 0.338 30 42 C1orf56 0 broad.mit.edu;hgsc.bcm.edu 37 1 151021328 151021331 + Splice_Site DEL AGTA AGTA - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AGATGCAACCAGTAAGTGTTTGGT 0.505 40 120 EPC2 26122 broad.mit.edu;hgsc.bcm.edu 37 2 149511681 149511682 + Frame_Shift_Del DEL AG AG - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GGAGAAGAACAGAGAAAATGCA 0.361 13 13 MYH15 22989 broad.mit.edu;hgsc.bcm.edu 37 3 108103610 108103612 + In_Frame_Del DEL TTC TTC - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 CCTGCTCAGATTCTTCTTGTCTT 0.473 55 130 PCDH18 54510 broad.mit.edu;hgsc.bcm.edu 37 4 138442647 138442649 + In_Frame_Del DEL TCT TCT - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GTGGAAAAACTCTTCTTCTTTTC 0.512 20 106 PABPC1 26986 broad.mit.edu;hgsc.bcm.edu 37 8 101733783 101733784 + Frame_Shift_Ins INS - - T TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 GAGCGAGGCCATGGGGTAGCTG 0.698 10 30 ESR2 2100 broad.mit.edu;hgsc.bcm.edu 37 14 64699865 64699866 + Frame_Shift_Del DEL TG TG - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TCACTGAGACTGTGGGTTCTGG 0.604 17 87 ABCA8 10351 broad.mit.edu;hgsc.bcm.edu 37 17 66887644 66887645 + Frame_Shift_Ins INS - - G TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TAATCATCGATGCTGCTCATGG 0.347 26 58 ZNF334 55713 broad.mit.edu;hgsc.bcm.edu 37 20 45130734 45130736 + In_Frame_Del DEL AAG AAG - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AGATTGACAAAAGAAGGTTTTCT 0.424 41 156 OGT 8473 broad.mit.edu;hgsc.bcm.edu 37 X 70756047 70756050 + Frame_Shift_Del DEL TTCC TTCC - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 AACGTATGCTTTCCTTCCAAGGGT 0.426 44 86 CIC 23152 broad.mit.edu 37 19 42795593 42795594 + Frame_Shift_Del DEL TG TG - TCGA-DB-5274-01A-01D-1468-08 TCGA-DB-5274-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ad0bc157-fb99-4b6c-80b7-384aac4304c0 f4361c01-824e-4b40-9f03-767a2796e586 TCCTGCAGTCTGTACCCTCCGC 0.624 7 64