Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ANO2 57101 hgsc.bcm.edu;broad.mit.edu 37 12 5860068 5860068 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TACAGAAGATGGGATGAGGAA 0.348 4 71 TBK1 29110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 64891776 64891776 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 AGAGATGGAAGGGGTGGTTAA 0.299 59 54 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 117768410 117768410 + Silent SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 GCCCATTCCCGGGACCCGAGG 0.701 43 68 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu 37 12 124401043 124401043 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CAAGCAGCTAGAGATGTCCAT 0.453 14 192 APBA2 321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 29390775 29390775 + Missense_Mutation SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 AATGCAGACACGCAGGTAAGC 0.478 29 42 VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 62302717 62302717 + Missense_Mutation SNP C C A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TTCTATGTTGCAATCCAGTTT 0.393 55 120 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577532 7577532 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 GGTGAGGATGGGCCTCCGGTT 0.577 76 18 ADPRM 56985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10614361 10614361 + Missense_Mutation SNP G G C TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CAAGCCTTTGGCACAGTTCAT 0.438 46 78 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9069716 9069716 + Silent SNP A A C TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 ACACGCCCTTAGTACTTCTGC 0.498 68 125 RDH8 50700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10127828 10127828 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CCAGCTGGACGTGTGCAGTGA 0.627 25 24 MTHFR 4524 hgsc.bcm.edu;broad.mit.edu 37 1 11854817 11854817 + Missense_Mutation SNP G G T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TCCCACTCCTGGGTACGGTAG 0.582 11 191 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 27100207 27100207 + Splice_Site SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 gcagcagcaACGGTGAGTAAA 0.577 10 65 KIFAP3 22920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 170003639 170003639 + Splice_Site SNP T T A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TGAGAAAAGCTTTAAAGAAGA 0.284 29 39 RGS13 6003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 192627429 192627429 + Missense_Mutation SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 AATTGCCTCACGGTGGAGCAG 0.413 11 91 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 198677313 198677313 + Missense_Mutation SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 AAAGCAGATACTACTATTTGT 0.294 51 72 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 ATAAGCATGACGACCTATGAT 0.393 49 81 SETD5 55209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 9476091 9476091 + Missense_Mutation SNP C C A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 AGCCCGAACTCTGAAGGAGAA 0.532 28 56 SRP72 6731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 57340227 57340227 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CAGTTATACCGTTTGGAACGC 0.353 26 27 RAD50 10111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 131940537 131940537 + Missense_Mutation SNP A A G TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CTTATACAGGACCAGCAGGAA 0.333 18 45 MCHR2 84539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 100382335 100382335 + Missense_Mutation SNP A A G TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 AAAATATAGCACACCAAAATC 0.323 90 135 CPED1 79974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 120629721 120629721 + Nonsense_Mutation SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 ATTTTGCCCCCGACCCTTCTT 0.597 71 94 UBN2 254048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 138982568 138982568 + Missense_Mutation SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TAAATTACCACGGAAATCTCA 0.418 26 49 GLDC 2731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 6644691 6644691 + Splice_Site SNP C C T TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TTCATCAATGCTCTAAAATTA 0.463 36 54 CTSV 1515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 99795313 99795313 + Missense_Mutation SNP C C A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 GCCATTCGAGCCCCATTCTGG 0.438 42 62 C12orf63 0 broad.mit.edu;ucsc.edu 37 12 97137849 97137849 + Missense_Mutation SNP G G A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CACTAAATATGCAAATCCATT 0.299 9 78 DUSP27 92235 broad.mit.edu;ucsc.edu 37 1 167097454 167097454 + Missense_Mutation SNP C C A TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TACAACGAGACCTCAAGTTCC 0.562 30 64 ZCCHC8 55596 broad.mit.edu;ucsc.edu 37 12 122958070 122958070 + Missense_Mutation SNP G G C TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TTGTTTTTCTGCTGGTTTCGG 0.373 30 51 FBN1 2200 broad.mit.edu;ucsc.edu 37 15 48795985 48795985 + Splice_Site SNP T T C TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 ACCACATACCTGAATTCTGTG 0.483 40 72 PHC2 1912 broad.mit.edu;hgsc.bcm.edu 37 1 33797964 33797966 + In_Frame_Del DEL CTT CTT - TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CCTGTGCATACTTCTTCTTGAGA 0.581 129 256 API5 8539 broad.mit.edu;hgsc.bcm.edu 37 11 43348086 43348087 + Frame_Shift_Del DEL AT AT - TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 GGTTTGTGACATATTTCTGTGA 0.376 70 164 GRAMD1B 57476 broad.mit.edu;hgsc.bcm.edu 37 11 123476150 123476153 + Frame_Shift_Del DEL ACTA ACTA - TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 CCAACAGCACACTAACATCCACAG 0.534 67 136 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76814305 76814305 + Frame_Shift_Del DEL A A - TCGA-DB-5275-01A-01D-1468-08 TCGA-DB-5275-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc50e0af-23d9-4528-b5ac-3974449bc1aa 12ee7643-7bc5-4051-baa7-d1f9a6245fa1 TAGAAATGATAAATAATCGTC 0.289 54 12