Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CD44 960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 35231542 35231542 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TTCTCTACATCACATGAAGGC 0.388 34 135 TMEM132A 54972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 60703701 60703701 + Silent SNP A A T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GGCAGGTGGCAGGCAGTGTCG 0.662 13 82 LRRC32 2615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 76371899 76371899 + Silent SNP G G C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GGTCAAGCCAGGTGAGCTGGA 0.617 19 99 MAML2 84441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 95826019 95826019 + Silent SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 AGTTGGCCATGGAGAATGCGG 0.597 22 11 AICDA 57379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 8757943 8757943 + Nonsense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GGGTTCCCTCGCAGAAAGTCG 0.667 15 62 RARG 5916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 53609147 53609147 + Silent SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGGTCACCTTGTTGATGATAC 0.547 28 115 ACSS3 79611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 81647382 81647382 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 AAACAGCTACCCAAAACCAGA 0.428 21 108 RNF17 56163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 25425618 25425618 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATGGCCATTACCTGTGAAAAT 0.343 11 62 CCNA1 8900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 37015366 37015366 + Missense_Mutation SNP T T C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CAAGCACTTTTGGGTAAGATT 0.398 39 73 SMAD9 4093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 37427768 37427768 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CTGTCACTCACGCACTCGGCA 0.562 6 43 MYCBP2 23077 hgsc.bcm.edu;broad.mit.edu 37 13 77714188 77714188 + Missense_Mutation SNP A A C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TTACCTCATCAATAAAAGTGA 0.398 5 84 TC2N 123036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 92268745 92268745 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TTTCGATCTCCAAAAGATGCT 0.403 15 61 DYX1C1 161582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 55742505 55742505 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GCCAACAGAGCGAGGAGCAGG 0.378 32 62 ALDH1A3 220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 101447398 101447398 + Missense_Mutation SNP G G A rs145630728 byFrequency TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GAATAGCACCGACTATGGACT 0.438 68 40 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24802981 24802981 + Silent SNP A A C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATGGAACTTCAGCTTGGGGAG 0.473 24 57 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24802982 24802982 + Missense_Mutation SNP G G C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGGAACTTCAGCTTGGGGAGA 0.468 24 55 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GATGGGCCTCCGGTTCATGCC 0.572 43 47 NEK8 284086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 27068158 27068158 + Nonsense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CAATACTCGCCGAGGCAGTCG 0.572 28 110 KANK2 25959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11303539 11303539 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CTCTGTGATGCTAATCTTCTT 0.612 22 107 ZNF20 7568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12244606 12244606 + Missense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATACTCAGATGACTTGTGTCC 0.408 61 231 SLC1A6 6511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15073101 15073101 + Silent SNP G G A rs150916469 byFrequency TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GCTCAGACCCGTTCTCTGTCC 0.557 44 146 ZNF99 7652 hgsc.bcm.edu;ucsc.edu 37 19 22952111 22952111 + Missense_Mutation SNP A A C rs34726149 by1000genomes TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GTCACATCCCAAAATGTCAAC 0.393 11 79 HNRNPL 3191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39328114 39328114 + Missense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GAGGAGCTGCGCTCACCTGAT 0.512 42 78 ZNF845 91664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 53854880 53854880 + Missense_Mutation SNP A A G TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGTAATTCATAAGGCAATTCA 0.413 41 67 NLRP4 147945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56369610 56369610 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CCCGTGTGCCCGAAGGAGCTC 0.537 29 142 CHD5 26038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6186737 6186737 + Missense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TAGTGGTGCCGCAGCAGCTTC 0.627 15 57 TESK2 10420 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 45887455 45887455 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 AGCATGTTTGCCCGGTTACTG 0.423 71 95 EFEMP1 2202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 56145171 56145171 + Missense_Mutation SNP T T C rs55849640 byFrequency TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGGGACAATGTCACATTCATC 0.373 32 76 DCTN1 1639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 74595916 74595916 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CCCACCTGGCCGAAGGAAGCT 0.532 19 103 SCN3A 6328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 165970378 165970378 + Missense_Mutation SNP T T C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CTCAAACCAGTTGTGCTCAAC 0.378 40 135 KLHL41 10324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170374777 170374777 + Missense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 AAAATTCCTCGTTCCATGTTT 0.388 10 77 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATAAGCATGACGACCTATGAT 0.393 27 36 C3orf18 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 50598380 50598380 + Missense_Mutation SNP C C A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GAAGTAGCAGCCTGTACAGAG 0.637 24 67 ANKRD17 26057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 73957066 73957066 + Silent SNP T T A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGCTGCTGTTTGGAGGTCTAG 0.473 48 141 FAM174A 345757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 99897847 99897847 + Missense_Mutation SNP A A T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GAACAGGATGATGAGGATGAT 0.383 29 61 GJA1 2697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 121769068 121769068 + Missense_Mutation SNP G G T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ACTAGCCATTGTGGACCAGCG 0.493 32 132 MAP7 9053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 136683671 136683671 + Missense_Mutation SNP C C A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CAGCTAGAAGCCTTGTGGCCT 0.567 17 66 REPS1 85021 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 139247539 139247539 + Splice_Site SNP G G C TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TTGACTTACAGGATCAGCTGG 0.393 12 12 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 84606491 84606491 + Missense_Mutation SNP C C G TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TCTTTTTCCTCTAATTTTGTG 0.483 15 69 C9orf96 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136256485 136256485 + Missense_Mutation SNP A A T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CATCATCCTCATCAGCAGTGA 0.552 78 317 BEND2 139105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 18234679 18234679 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GCCATCATTGCCGCCTGGAAA 0.408 43 6 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76940083 76940083 + Nonsense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TTCCGCACACCACCTGAAATG 0.343 81 14 ZNF71 58491 broad.mit.edu;ucsc.edu 37 19 57132875 57132875 + Missense_Mutation SNP G G A rs141566979 byFrequency TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CTCAGTACCCGCATGTCATGA 0.617 11 66 C8orf74 0 broad.mit.edu;ucsc.edu 37 8 10557893 10557893 + Missense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ACCCCTATCCCGCCCCCCATC 0.587 17 19 RSPH9 221421 broad.mit.edu;ucsc.edu 37 6 43612865 43612865 + Silent SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGCTGTCTCTGGAGCTGGCGT 0.657 7 52 ZFP57 346171 broad.mit.edu;ucsc.edu 37 6 29641322 29641322 + Missense_Mutation SNP T T A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 GCTATAGAGGTAGGAGCGCCT 0.542 21 91 MTL5 9633 broad.mit.edu;ucsc.edu 37 11 68480850 68480850 + Missense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGGCTGGAAAGCTTCTGGATT 0.468 56 262 VWA3B 200403 broad.mit.edu;ucsc.edu 37 2 98928738 98928738 + Nonsense_Mutation SNP C C T TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ACCTCCACCTCGAGCAGCCCT 0.607 20 77 HECTD4 283450 broad.mit.edu;ucsc.edu 37 12 112674788 112674788 + Missense_Mutation SNP G G A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATCCTGGAGCGCGTCATTCCC 0.572 6 27 MUC16 94025 broad.mit.edu;ucsc.edu 37 19 9082521 9082521 + Missense_Mutation SNP C C A TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CTGCAATGGTCTGGCTTGAGG 0.478 50 246 R3HDM1 23518 broad.mit.edu;hgsc.bcm.edu 37 2 136389572 136389575 + Splice_Site DEL GTAA GTAA - TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATACAAGAATGTAAGTGTCAAGAG 0.324 29 105 SPOCK3 50859 broad.mit.edu;hgsc.bcm.edu 37 4 167810286 167810287 + Frame_Shift_Del DEL TT TT - TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 CTTACCTCTCTTAACATTTCTG 0.337 33 79 GFPT2 9945 broad.mit.edu;hgsc.bcm.edu 37 5 179744060 179744061 + Splice_Site DEL TG TG - TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 TGAAGTTACCTGGTCAAATAAA 0.391 27 102 ADAMTS14 140766 broad.mit.edu;hgsc.bcm.edu 37 10 72493665 72493665 + Frame_Shift_Del DEL G G - TCGA-DB-5281-01A-01D-1468-08 TCGA-DB-5281-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ccf3d939-7964-4cc0-b2f6-e7cb8ee026a1 b8f9db26-3096-4ad2-9b45-530bccdc8612 ATGACGGTCAGGGGAATGGCT 0.652 19 92