Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 62256122 62256122 + Missense_Mutation SNP A A C TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TGAAATCAATAATGTCACTAT 0.353 7 39 SMAD3 4088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 67457635 67457635 + Missense_Mutation SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GATCCCGGCCGAGTTCCCCCC 0.602 56 81 CES3 23491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67006756 67006756 + Splice_Site SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CTCCCACCCAGGGACCCCAAT 0.602 30 47 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577141 7577141 + Missense_Mutation SNP C C T TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GCTGTTCCGTCCCAGTAGATT 0.517 4 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577142 7577142 + Missense_Mutation SNP C C T TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CTGTTCCGTCCCAGTAGATTA 0.517 4 0 KRT34 3885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39535942 39535942 + Silent SNP G G A rs144246640 byFrequency TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CCACCTCCACGTTGAGGCGGT 0.557 13 18 REXO1 57455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1828027 1828027 + Missense_Mutation SNP C C T TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CTTGGCGGCCCGCTCATCCCG 0.652 10 14 RHPN2 85415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 33535237 33535237 + Missense_Mutation SNP T T C TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TTCTGCAATTTACTCCGGCCG 0.483 16 29 CYP4A11 1579 hgsc.bcm.edu;broad.mit.edu 37 1 47395834 47395834 + Missense_Mutation SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CTCCTGAGACGCAGGTGGATT 0.587 18 27 DCLRE1B 64858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 114453833 114453833 + Missense_Mutation SNP C C T TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GAGTCCTCGGCGCCTGGAGTT 0.532 19 19 TOR1AIP2 163590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 179819995 179819995 + Nonsense_Mutation SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GCCAGCAGTCGCCTCCTCAGT 0.542 24 36 TLK1 9874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 171871388 171871388 + Missense_Mutation SNP T T C TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GTTTATTCTTTTCAGCTCACG 0.378 8 43 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 ATAAGCATGACGACCTATGAT 0.393 14 22 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 212587211 212587211 + Missense_Mutation SNP G G C TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 ACAAAGGTTTGGGGACACTGA 0.383 14 13 FEZF2 55079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 62355877 62355877 + Missense_Mutation SNP T T C TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TTGCCGCAAGTGGCGCACGTG 0.527 43 68 FARS2 10667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 5369186 5369186 + Missense_Mutation SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 AACTTTGACAGCCTGCTCATC 0.557 17 18 SYNJ2 8871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 158516963 158516963 + Missense_Mutation SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CAGAGCAACAGCCAGCTTCTC 0.642 9 10 FGL2 10875 hgsc.bcm.edu;broad.mit.edu 37 7 76826042 76826042 + Silent SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CTCTTGGTCAGAAGATGAATT 0.408 5 72 COL1A2 1278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 94056997 94056997 + Missense_Mutation SNP A A G TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GGTGGTTATGACTTTGGTTAC 0.532 34 61 FAM9B 171483 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 8993591 8993591 + Missense_Mutation SNP C C A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TCGGAAAAAACTCTGTCACAA 0.328 11 22 ATRX 546 hgsc.bcm.edu;ucsc.edu 37 X 76907606 76907606 + Nonsense_Mutation SNP C C A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TTAGTTACCTCTCTCAATTTT 0.438 24 38 MORC4 79710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 106185949 106185949 + Silent SNP T T A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 AGGATTCAACTGCTTTTCGTC 0.512 42 62 SASH3 54440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 128926408 128926408 + Missense_Mutation SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 AGTCCACACCGACTTCACTCC 0.622 27 169 SLC9A3 6550 broad.mit.edu;ucsc.edu 37 5 491957 491957 + Silent SNP G G A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TACCCACGACGGCGTACAACA 0.642 4 9 GNG12 55970 broad.mit.edu;hgsc.bcm.edu 37 1 68171150 68171151 + Frame_Shift_Ins INS - - T TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 GATGATGCAAGTTTTTTTATCC 0.436 23 39 RBM27 54439 broad.mit.edu;hgsc.bcm.edu 37 5 145608531 145608531 + Frame_Shift_Del DEL A A - TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 CCAGCAGAGGAAGAACGAGAT 0.418 27 39 NETO1 81832 broad.mit.edu;hgsc.bcm.edu 37 18 70526115 70526116 + Frame_Shift_Ins INS - - A TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TCTCCATCAGCAAAAAATTTAA 0.342 14 21 TP53 7157 broad.mit.edu 37 17 7577143 7577143 + Silent SNP C C T TCGA-DB-A4X9-01A-11D-A26M-08 TCGA-DB-A4X9-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx eea26f3f-6798-4b36-8e5c-a1de8c55f666 59d8d896-b937-4a7b-b503-f112f5570356 TGTTCCGTCCCAGTAGATTAC 0.522 3 0