Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count C11orf30 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 76174901 76174901 + Missense_Mutation SNP A A G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 AAACCCAGAAAACGAAGGCGA 0.413 29 81 DTX1 1840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 113515358 113515358 + Missense_Mutation SNP A A G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 ATCACCATCCAGAACGCCTAC 0.607 11 58 RPS6KL1 83694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 75386664 75386664 + Missense_Mutation SNP T T G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 CGCTCCTTGTTGGGGTCAACT 0.607 12 30 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579406 7579406 + Nonsense_Mutation SNP G G C TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 GACAGAAGATGACAGGGGCCA 0.627 53 26 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10210260 10210260 + Missense_Mutation SNP G G A TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 GCTCACATCCGTGATGGCCTT 0.517 11 64 TADA2A 6871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 35783699 35783699 + Missense_Mutation SNP T T C TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 CCACCTCCTTTTTTCCTCTGC 0.443 9 59 TIE1 7075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43784936 43784936 + Missense_Mutation SNP G G A rs45475401 byFrequency TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 TGCCCGGAATGTGCTGGTCGG 0.562 8 54 SSTR4 6754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 23016513 23016513 + Missense_Mutation SNP C C G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 TCAACATGTTCACCAGCGTCT 0.711 34 74 TMEM161B 153396 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 87502987 87502987 + Missense_Mutation SNP A A G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 GTTAATGAAAATAGAACTTTG 0.318 8 13 PCDHGA1 56114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140710809 140710809 + Silent SNP C C T TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 AACAGGGAGCCGATGGGCCTC 0.527 10 44 TFAP2B 7021 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 50811003 50811003 + Silent SNP C C G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 CGCTCAAAGGCATGGACAAGA 0.582 12 29 IL17F 112744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 52109195 52109195 + Splice_Site SNP C C A TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 TGCTACTCACCATGGCTGGGC 0.453 11 50 SLC25A10 1468 broad.mit.edu;ucsc.edu 37 17 79674051 79674051 + Missense_Mutation SNP A A G TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 AACTACATCCAAGGCATCAAC 0.587 8 50 IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 ATAAGCATGACGACCTATGAT 0.393 4 21 ERAP1 51752 broad.mit.edu;hgsc.bcm.edu 37 5 96116772 96116775 + Frame_Shift_Del DEL GTTT GTTT - TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 TTTTGTACAAGTTTGTTCCAGTTT 0.387 10 22 CNOT1 23019 broad.mit.edu;hgsc.bcm.edu 37 16 58589320 58589323 + Frame_Shift_Del DEL TCTT TCTT - TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 TATATGTAACTCTTTATCAGGATA 0.373 15 70 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938089 76938092 + Frame_Shift_Del DEL TCTC TCTC - rs141180098 TCGA-DB-A4XC-01A-11D-A26M-08 TCGA-DB-A4XC-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx b377c971-575a-49c8-896e-77eaf183423d 338ea083-8e51-4a68-b230-99b8c8356483 GAAGAGAAAGTCTCTCTCTCTTGT 0.412 46 26