Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SMCO3 440087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 14959571 14959571 + Missense_Mutation SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c TACTTCTTCCCGCCTTTTTGG 0.393 64 85 VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 62214622 62214622 + Missense_Mutation SNP C C A rs115472982 by1000genomes TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GCAACAGCAGCCATTAGAGAA 0.378 17 95 HERC1 8925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63966612 63966612 + Missense_Mutation SNP G G A TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CATGGCTTGCGCTCGTTCCAG 0.448 17 56 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631838 90631838 + Missense_Mutation SNP C C T rs121913503 TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c ATGGGCGTGCCTGCCAATGGT 0.632 51 56 CDH16 1014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66950296 66950296 + Missense_Mutation SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CCTGACAGCACGATCTGGCCT 0.622 15 29 C3 718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6707823 6707823 + Missense_Mutation SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GCCCTCTGGGCGGTCTGCTGG 0.672 84 93 CD209 30835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7809893 7809893 + Silent SNP G G A rs61742035 TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c TGATGGAGTCGTGCCAGTTCC 0.587 50 64 EML4 27436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 42553330 42553330 + Missense_Mutation SNP G G T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c ATCAGGAATCGATCGGATTGT 0.368 32 142 LRP2 4036 hgsc.bcm.edu;broad.mit.edu 37 2 170112638 170112638 + Silent SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CAAGTCCAAACGGATGTGTCA 0.373 6 55 FGD5 152273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 14922122 14922122 + Missense_Mutation SNP T T C TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CAGGAACTGCTATCTTCAGAG 0.532 40 39 NIPBL 25836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 37022199 37022199 + Missense_Mutation SNP C C A TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CGAACAAAAGCCATGAAGTGT 0.343 16 44 SIM1 6492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 100868815 100868815 + Silent SNP G G A TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GAGAGCTGCAGCCCTTTGTAT 0.507 12 23 ANKIB1 54467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 91981897 91981897 + Silent SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CTGATACACTCAGCTTCCCAT 0.433 168 188 MATN2 4147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 99045826 99045826 + Missense_Mutation SNP T T G TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c AATGCAAATGTGAAAACCTTA 0.388 9 9 WISP1 8840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 134225313 134225313 + Silent SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c AGGCTGCCATCTGTGACCCCC 0.617 55 87 CDK5RAP2 55755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 123342218 123342218 + Silent SNP A A G TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c TGAGCGTCCCAGGGACGGTGA 0.662 17 53 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139412278 139412278 + Missense_Mutation SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GTTCGAGACGCACTCGTTGAC 0.662 71 43 POF1B 79983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 84586012 84586012 + Missense_Mutation SNP C C T TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c CGTATTCTTACGGCTCAGATC 0.383 27 5 COL4A5 1287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 107823773 107823773 + Missense_Mutation SNP G G T rs104886070 TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GGACTTCCTGGTGACCGAGGG 0.428 76 6 ZCWPW1 55063 broad.mit.edu;hgsc.bcm.edu 37 7 100014771 100014773 + In_Frame_Del DEL AAG AAG - TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GGCTGGGCACAAGAAGTCTCTGC 0.419 22 79 NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29665752 29665755 + Frame_Shift_Del DEL ACTT ACTT - TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c AGGACCTGACACTTACAACAGTCA 0.319 67 19 SYNRG 11276 broad.mit.edu;hgsc.bcm.edu 37 17 35902548 35902549 + Frame_Shift_Del DEL GA GA - TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c AGGACAAATGGAGAGAGTTTTC 0.455 21 98 MAP3K15 389840 broad.mit.edu;hgsc.bcm.edu 37 X 19380935 19380938 + Frame_Shift_Del DEL CTCT CTCT - TCGA-DB-A4XG-01A-11D-A27K-08 TCGA-DB-A4XG-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 512b5735-cba4-4d39-ba83-00df05dc3ce2 b62dc580-39c1-4ed8-9772-90735574c16c GATTCTGGTACTCTCTCTCTTTTT 0.328 26 58