Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KIAA1549L	25758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	33628229	33628229	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	CTATTTGACAACTCCAGCAAG	0.542	16	40
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	113608372	113608372	+	Silent	SNP	C	C	A			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	AATATATATTCACTGGCAGGA	0.418	72	35
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	20786709	20786709	+	Missense_Mutation	SNP	A	A	G	rs113434458		TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	ACCAAGTAGAACAGGTAATTC	0.413	12	32
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	75190803	75190803	+	Silent	SNP	A	A	G			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	TAGAAGAAGAAGGCATAACCT	0.423	17	110
FSD1	79187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	4310577	4310577	+	Silent	SNP	A	A	G			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	TGCTACAGGCACTCAAGTTCC	0.587	37	82
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42799051	42799051	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	TTGAAGATCCGTGAGGTGCGC	0.627	36	41
EMILIN1	11117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	27305238	27305238	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	CCATCATGGCGGCAGCAGCAG	0.672	18	46
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	ATAAGCATGACGACCTATGAT	0.393	10	40
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	663881	663881	+	Silent	SNP	C	C	A			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	AGTCTTCAACCTGCTGTATCC	0.532	42	123
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	31848860	31848860	+	Silent	SNP	C	C	T			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	AGATCAGCTCCCCGACATACC	0.532	22	68
CTPS2	56474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	16608918	16608918	+	Nonstop_Mutation	SNP	A	A	T			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	TATTCATTTCAGCTTATTTCC	0.413	16	41
SERAC1	84947	broad.mit.edu;hgsc.bcm.edu	37	6	158537270	158537270	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DB-A64U-01A-11D-A29Q-08	TCGA-DB-A64U-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c389c4d-e9d7-4471-922e-ae545d0d9b65	4e28b253-e110-458f-b4f3-aa7de270d04a	ACCAGCAGCTCTGAGCTTCCT	0.448	25	39