Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ADARB2 105 hgsc.bcm.edu;broad.mit.edu 37 10 1405304 1405304 + Silent SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GTGCGGCCTGCGCGGCCTGAC 0.746 10 7 PRF1 5551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 72358832 72358832 + Silent SNP A A C TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AGTTGGAGATAAGCCTGAGGT 0.662 30 44 PDE6C 5146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 95425134 95425134 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AGATTCAGGAGGTGGTGATGA 0.313 9 34 OR52B4 143496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4388941 4388941 + Silent SNP T T C TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AAATGTTTATTCGAATGTCAT 0.343 28 52 SDS 10993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 113830761 113830761 + Silent SNP A A G TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TGGGCAACCTATTTGTCATGC 0.617 163 214 KLF5 688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 73636332 73636332 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ACACCAGACCGCAGCTCCAGA 0.532 46 44 CLEC14A 161198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 38723787 38723787 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GGGGACTCCGCCAGCAAGGCA 0.547 50 117 TELO2 9894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 1557703 1557703 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CTGGAAGCCCGGTCCTGGCTG 0.647 15 30 PDILT 204474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 20387485 20387485 + Nonsense_Mutation SNP G G A rs139247719 TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CTAATTTGTCGTCTCAACCAA 0.463 33 36 ATXN2L 11273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 28847394 28847394 + Silent SNP A A G TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GGGTGCCTGCACTCTCAGCTT 0.687 71 106 SEZ6L2 26470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 29888271 29888271 + Splice_Site SNP T T G TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CCTCGGGACCTCTGCAGGGGA 0.667 17 40 TSNAXIP1 55815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67859118 67859118 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GATCCTCATCGCAGACCTGAA 0.542 45 63 NEURL4 84461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7231068 7231068 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AACACAGAGCGTCCATCTCTC 0.642 69 98 PRKAR1A 5573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 66526499 66526499 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AAGCTGGACCGACCTAGATTT 0.488 55 74 SMCHD1 23347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 2732375 2732375 + Missense_Mutation SNP A A G TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CAGATCAAACATCAGGATGAG 0.363 33 53 PRSS57 400668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 691902 691902 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GGGTGGTAGTCGGGGTGTGTG 0.622 21 48 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42791817 42791817 + Missense_Mutation SNP G G T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CAAGATCCTGGGCGAGTGGTG 0.612 41 23 RBMXL1 494115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 89448560 89448560 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ATATCCATCACGTGAGCTGCT 0.498 122 43 DENND2D 79961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 111738675 111738675 + Missense_Mutation SNP G G C TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ACTTCATCCAGGATCTGCAGG 0.552 32 7 OR6N2 81442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158746704 158746704 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ATGTGAGGCACAGGTAGAAAA 0.433 22 25 EPRS 2058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 220142262 220142262 + Silent SNP T T A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GGCTTTTAGCTCCCATGGATG 0.433 36 47 TLR5 7100 hgsc.bcm.edu;ucsc.edu 37 1 223286129 223286129 + Missense_Mutation SNP G G T rs764535 byFrequency TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AGTCAAGGGGGTATACTGGCT 0.498 35 55 MMP9 4318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 44641108 44641108 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TTCGGCCACGCGCTGGGCTTA 0.637 37 56 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ATAAGCATGACGACCTATGAT 0.393 25 36 ZBTB11 27107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 101373567 101373567 + Nonsense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TGATAGCCTCGAACCTCAGGC 0.363 32 41 ZBTB20 26137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 114058129 114058129 + Missense_Mutation SNP T T C TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CATGTGCACGTTGAGGGAGCT 0.527 79 154 IGSF10 285313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 151162901 151162901 + Missense_Mutation SNP T T C TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AACTGGTTTCTTATCAAAGTC 0.438 51 65 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TCCTCTCTCTGAAATCACTGA 0.333 17 23 PCDHGC3 5098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140857769 140857769 + Missense_Mutation SNP C C A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TTATCTACTTCTTTCTCTAAT 0.488 208 279 EZR 7430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 159188410 159188410 + Silent SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TGGGCTCTGCGCCCTCATCCT 0.642 51 104 AGR3 155465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 16918142 16918142 + Missense_Mutation SNP A A G TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ACCTCTTGAGAGTGTCTGAGG 0.383 19 32 SKAP2 8935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 26729921 26729921 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GTGATGGACACTATCCTGACT 0.378 25 49 MCPH1 79648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 6301937 6301937 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TGGTGGCTTACACTCATCTTT 0.338 22 38 WNK2 65268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 96018613 96018613 + Silent SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TCCCGGCCCCCGCCTGCCCTC 0.751 7 14 AGPAT2 10555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139571516 139571516 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CATGATGAGGCCCACGGGCCC 0.637 75 134 ASMTL 8623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 1551213 1551213 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 GGACAGCTCCGAGAACTTCAC 0.637 33 20 NHS 4810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 17744930 17744930 + Nonsense_Mutation SNP G G T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TTCTCGAATGGAAAACGCCAA 0.468 68 80 GK 2710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 30739086 30739086 + Missense_Mutation SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ACGATGGAGCGGTTTGAACCT 0.502 23 29 TRO 7216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54957391 54957391 + Missense_Mutation SNP A A T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TGGACCGAGCACCAGTGCTGG 0.587 25 30 PBDC1 51260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 75397598 75397598 + Missense_Mutation SNP A A T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 gaagaagagaacaccaagaat 0.413 11 16 USP26 83844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 132159579 132159579 + Silent SNP T T C TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TCAACATCTCTTCAAAGATCT 0.458 30 43 GPR112 139378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 135405392 135405392 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AAGCATGATGCGTAGCTTTCC 0.448 85 98 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 148068962 148068962 + Missense_Mutation SNP A A G TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AACTGTAACAATGGCCCAGTC 0.532 67 91 COL8A1 1295 broad.mit.edu;ucsc.edu 37 3 99513494 99513494 + Missense_Mutation SNP C C T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ATGCCAGGTGCGCCAGGTGTA 0.642 68 129 HECW1 23072 broad.mit.edu;ucsc.edu 37 7 43483866 43483866 + Silent SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 CCCAAATTCAGGACAGCCCCA 0.532 21 47 TDGF1P3 6998 broad.mit.edu;ucsc.edu 37 X 109764561 109764561 + RNA SNP G G A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 AGCGTGTGCTGCCCATGGGAA 0.572 47 55 ZCCHC10 54819 broad.mit.edu;hgsc.bcm.edu 37 5 132334445 132334446 + Frame_Shift_Ins INS - - T TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TCACTGTCCTCTGAGGAGGAAG 0.48 12 22 ZNF292 23036 broad.mit.edu;hgsc.bcm.edu 37 6 87964502 87964503 + Frame_Shift_Ins INS - - A TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 ATCTGGAAGTTAAACGTGCTTG 0.376 19 39 BCOR 54880 broad.mit.edu;hgsc.bcm.edu 37 X 39930292 39930292 + Frame_Shift_Del DEL G G - TCGA-DB-A64W-01A-11D-A29Q-08 TCGA-DB-A64W-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7e7f9bb4-37b2-4e68-8a34-a2388eac7ba0 5bb15587-a86c-4da2-be1d-7b1fa9f105a8 TTTTTGTCCTGATTTCCTTTC 0.493 40 58