Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ANK3 288 hgsc.bcm.edu;broad.mit.edu 37 10 61834572 61834572 + Missense_Mutation SNP C C T rs146929899 byFrequency TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TTTTCGGAGGCGGCTTTTGCT 0.418 9 83 C11orf35 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 557018 557018 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CCCCACTCCACGGTCTTGTGA 0.672 9 5 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1271146 1271146 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CACACCCGTGGCCACCATGTC 0.627 24 166 TMEM132A 54972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 60698058 60698058 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CAAGCTGGACCGCTTCAAGGG 0.637 78 97 SLC22A12 116085 hgsc.bcm.edu;broad.mit.edu 37 11 64360337 64360337 + Silent SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CTGCTGCGTGCGGCCCTGCCT 0.627 5 105 RELA 5970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65429217 65429217 + Silent SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GGCAGTCCTTTCCTACAAGCT 0.617 14 86 ALDH3B2 222 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67430801 67430801 + Missense_Mutation SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GGGGGCGAGCAGGCAGGTGCG 0.617 27 38 SLC2A14 144195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7982600 7982600 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CATTGAATTGCGCCTGTAAGG 0.458 11 42 PMEL 6490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56348103 56348103 + Silent SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GCAACTGGGGTACGGAGAAGT 0.532 28 61 LRRC16B 90668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24531941 24531941 + Missense_Mutation SNP G G C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CCCAGCTAAGGACGCTGTCAG 0.627 37 38 KLHL28 54813 hgsc.bcm.edu;broad.mit.edu 37 14 45403686 45403686 + Silent SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AAACGCATATTCCAAATTCAT 0.373 4 54 FANCM 57697 hgsc.bcm.edu;broad.mit.edu 37 14 45645432 45645432 + Missense_Mutation SNP T T G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AAGCGAATCTTTACCTGTGTC 0.373 8 111 MCTP2 55784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 95013576 95013576 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TTTAACTGGACGGTCCCCTTC 0.403 44 50 YWHAE 7531 hgsc.bcm.edu;broad.mit.edu 37 17 1268267 1268267 + Missense_Mutation SNP C C G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CAATCACATTCTTATATGCAA 0.423 5 86 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GCACAAACACGCACCTCAAAG 0.542 12 18 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578191 7578191 + Missense_Mutation SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GGCGGCTCATAGGGCACCACC 0.552 17 29 KRT28 162605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38954585 38954585 + Nonsense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TCCAGGACTCGCCGTAATCCG 0.498 9 80 KRT31 3881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39553720 39553720 + Silent SNP G G C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TGTGGCAGCTGGGGGGCACGC 0.662 32 47 MED26 9441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 16689204 16689204 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TTCCAGCACCGCCACCATGTT 0.557 32 46 GMIP 51291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 19745858 19745858 + Silent SNP T T G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CACGGTGTTCTATCTCAGCCG 0.582 60 84 EML2 24139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 46124545 46124545 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGTGTGTCTCCGTGGCCCTCT 0.627 35 66 HRC 3270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 49656971 49656971 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CATGATGGGTGCCTTTCTCTC 0.552 12 37 PRDM2 7799 hgsc.bcm.edu;broad.mit.edu 37 1 14107261 14107261 + Missense_Mutation SNP C C G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TCCCCTCCTTCCTACCGTACC 0.602 8 122 EPHA8 2046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22913059 22913059 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGCTCCAGCCGCCCAAGCCTG 0.657 10 68 SYTL1 84958 hgsc.bcm.edu;broad.mit.edu 37 1 27674019 27674019 + Missense_Mutation SNP A A T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TTCGGCTCTGACCTTGTCCGA 0.642 5 75 CYP4A22 284541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 47607808 47607808 + Missense_Mutation SNP G G C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TGAATGGGCAGACATGGTTCC 0.532 36 54 NEGR1 257194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 72163701 72163701 + Silent SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGTTGACAACAACTTTTACTT 0.348 18 16 AHCYL1 10768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 110551714 110551714 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AAAACTGGCCGAAGATCTTTG 0.433 30 71 MIA3 375056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 222801580 222801580 + Missense_Mutation SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GGAAGATATGAAAACTCCAGC 0.413 33 42 KRTAP10-3 386682 hgsc.bcm.edu;broad.mit.edu 37 21 45978112 45978112 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CACACGGGGCGGCAGAGGAGG 0.697 23 204 KRTAP10-12 386685 hgsc.bcm.edu;broad.mit.edu 37 21 46117612 46117612 + Missense_Mutation SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TGTGCCTGTCTGCTCTGGGGC 0.637 165 234 CCDC116 164592 hgsc.bcm.edu;broad.mit.edu 37 22 21988388 21988388 + Silent SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ACCCACCATCCACATGTGGCA 0.607 11 158 MAPK1 5594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 22142614 22142614 + Missense_Mutation SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGAAAGCAAATAGTTCCTAGC 0.338 30 37 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179395863 179395863 + Missense_Mutation SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CAGCCAGGTCACAGTTGGTAC 0.512 93 144 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ATAAGCATGACGACCTATGAT 0.393 13 22 TMEM110 375346 hgsc.bcm.edu;broad.mit.edu 37 3 52877766 52877766 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ATCAGCATGACGATGGCCAGC 0.517 10 125 TMPRSS11F 389208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 68930540 68930540 + Missense_Mutation SNP T T C rs145412545 TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CAAAGCAATGTCATTTTCATT 0.378 5 32 CXCL5 6374 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 74863731 74863731 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ACAAGTACCCGTCCAAAATTT 0.388 41 50 SEPT11 55752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 77941664 77941664 + Missense_Mutation SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GTTGAGAATGAAAATCATTGC 0.453 10 80 MMRN1 22915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 90816198 90816198 + Missense_Mutation SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CAGTAAGCATTCTTGGACTAT 0.428 30 106 MMRN1 22915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 90833188 90833188 + Silent SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GTGGGCCGAAATGTCAACTAA 0.368 15 10 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 187629810 187629810 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGCAGGAATGGCCTTTACCAT 0.388 12 80 CDH6 1004 hgsc.bcm.edu;broad.mit.edu 37 5 31297444 31297444 + Missense_Mutation SNP A A T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GATCCAACATATGGGAACAGT 0.363 8 71 DAB2 1601 hgsc.bcm.edu;broad.mit.edu 37 5 39383207 39383207 + Missense_Mutation SNP T T G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GGGAAAGAAGTTGAGATTGGC 0.468 7 116 RGMB 285704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 98129390 98129390 + Missense_Mutation SNP C C G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AATGGGACTCCCCGTGGAGGC 0.502 13 11 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33626884 33626884 + Silent SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GCGACAACGCCGGCTGCAAGG 0.632 58 66 LGSN 51557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 63995539 63995539 + Missense_Mutation SNP G G T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ACGCCGTGGAGGTCTGTTGCT 0.418 15 25 LTV1 84946 hgsc.bcm.edu;broad.mit.edu 37 6 144171327 144171327 + Silent SNP A A C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AAGATGTTGGATTGTTAAATA 0.313 4 67 PMS2 5395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 6045580 6045580 + Missense_Mutation SNP T T G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ACCGCAGTGCTTAGACTCAGT 0.433 67 236 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 11485796 11485796 + Missense_Mutation SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CCTTGTACTTTCATTCCCAGC 0.433 20 122 PUS7 54517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 105098346 105098346 + Missense_Mutation SNP T T A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TAGAGAAAAATCCATTTTCAG 0.458 44 53 TRPV5 56302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142609806 142609806 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TAGTTGGCAGGTGCATCAATA 0.493 55 59 TEX15 56154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 30694848 30694848 + Silent SNP T T G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CATTAAGGGTTATATGCCCAG 0.383 27 37 KAT6A 7994 hgsc.bcm.edu;ucsc.edu 37 8 41794934 41794934 + Silent SNP C C A rs13748 byFrequency TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CGATCTCAAACGTGGGTTCTA 0.438 26 49 TRPA1 8989 hgsc.bcm.edu;broad.mit.edu 37 8 72967828 72967828 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GTATTGATACGCCCATAACTT 0.413 24 29 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 113395856 113395856 + Missense_Mutation SNP C C A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TCCAGAGAATCCCAATTATGT 0.348 13 55 NFX1 4799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 33311160 33311160 + Missense_Mutation SNP A A G TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AAAACATGTGAATGTGGACGA 0.413 36 95 FAM47C 442444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 37027824 37027824 + Silent SNP G G T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGACTGGAGTGTCCCATCTCC 0.632 56 80 TBC1D25 4943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48418191 48418191 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TGACCGGGCCCACCCCTACTA 0.632 11 48 RLIM 51132 hgsc.bcm.edu;broad.mit.edu 37 X 73812349 73812349 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ATGTCACATGGTGCCGGGTTC 0.438 7 110 ARMCX2 9823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100910839 100910839 + Missense_Mutation SNP T T A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TCTGAGATTGTCATAGATAAT 0.358 26 46 ARMCX5 64860 hgsc.bcm.edu;broad.mit.edu 37 X 101857471 101857471 + Silent SNP T T A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGGCAAATATTAGGTCCTATG 0.463 19 242 L1CAM 3897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153130307 153130307 + Silent SNP G G T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CTTCCCGTACGATGGCTTCAC 0.632 63 177 EIF4G3 8672 broad.mit.edu;ucsc.edu 37 1 21306934 21306934 + Missense_Mutation SNP T T C TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce AGGGCCACTATGACGGTACTA 0.423 4 14 HSPG2 3339 broad.mit.edu;ucsc.edu 37 1 22159014 22159014 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CCCCCACGAGGCCGAAGGAGA 0.662 48 36 KRTAP13-1 140258 broad.mit.edu;ucsc.edu 37 21 31768649 31768649 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TCCTGCTACCGTCCCAGAACC 0.607 14 117 RASGRF2 5924 broad.mit.edu;ucsc.edu 37 5 80382767 80382767 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ACGTTCATCCGCCAAGGTAAG 0.547 36 55 BTNL2 56244 broad.mit.edu;ucsc.edu 37 6 32362767 32362767 + Nonsense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CCATCTTCTTGCCCCTCCACA 0.547 24 158 PCSK6 5046 broad.mit.edu;ucsc.edu 37 15 101971660 101971660 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TGTTCTTGTCGCCACAATGCT 0.552 6 29 EPHA10 284656 broad.mit.edu;ucsc.edu 37 1 38184352 38184352 + Missense_Mutation SNP C C T TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce ATCTCGGCCACGGCCTCCAGG 0.667 5 51 TRIML1 339976 broad.mit.edu;ucsc.edu 37 4 189065196 189065196 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GCAGGAGCGAGCCACTCTTGC 0.567 5 30 HERC2 8924 broad.mit.edu;ucsc.edu 37 15 28491947 28491947 + Missense_Mutation SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GCTGGTAGAAGCAATGCTGGC 0.507 36 48 RYK 6259 broad.mit.edu;ucsc.edu 37 3 133878164 133878164 + Silent SNP G G A TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce CAATGTCCACGTAGGGAGTCT 0.488 6 26 POLR3A 11128 broad.mit.edu;hgsc.bcm.edu 37 10 79785474 79785474 + Frame_Shift_Del DEL T T - TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GTCAGCCAAGTTTTTCCCACA 0.483 25 92 TAOK1 57551 broad.mit.edu;hgsc.bcm.edu 37 17 27778575 27778578 + Frame_Shift_Del DEL AACT AACT - TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce GGATGCCATCAACTAACAGAGCAG 0.446 16 28 BCOR 54880 broad.mit.edu 37 X 39922291 39922291 + Frame_Shift_Del DEL T T - TCGA-DB-A64X-01A-11D-A29Q-08 TCGA-DB-A64X-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc434402-b13e-4f3a-ace5-ccb1d3924f4f 96550f20-a2c9-44cc-b049-b725483fdfce TGAAAGACTCTTCATGGGCGG 0.592 4 5