Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NLRP14 338323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 7064302 7064302 + Missense_Mutation SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TAAGAGGTGGGCCATGAAAGT 0.428 27 209 NCKAP1L 3071 hgsc.bcm.edu;ucsc.edu 37 12 54914539 54914539 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TGCCATGTTGCGTTATGCCAT 0.463 231 495 LGR5 8549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 71978453 71978453 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 GTGCCATCACCAGCTTATCCA 0.458 95 187 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631838 90631838 + Missense_Mutation SNP C C T rs121913503 TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 ATGGGCGTGCCTGCCAATGGT 0.632 51 82 KRT36 8689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39642800 39642800 + Missense_Mutation SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 CTTGCATGCCGTGGCACAAGG 0.577 5 27 CDH20 28316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 59174700 59174700 + Silent SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TCAATGCAGAGATGAAATATA 0.433 15 144 SERPINB3 6317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 61323264 61323264 + Missense_Mutation SNP A A C TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TGTCCATTCCATCAATTTCTC 0.378 29 131 GBP5 115362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 89728016 89728016 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 ATCATTTGCTCGTTCTGCCTT 0.463 66 80 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 233344354 233344354 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 CTGGCTTTGGCCCCTGTATCA 0.423 14 93 PCSK2 5126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 17434533 17434533 + Silent SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 CCCTGTACGACGAGAGCTGCT 0.597 26 152 PI4KA 5297 hgsc.bcm.edu;broad.mit.edu 37 22 21115635 21115635 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 AGTAGCAGAACATTACCTGGA 0.368 11 127 SPECC1L 23384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 24717648 24717648 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TATTATGGCTCACCAGCCGAC 0.438 86 187 C2orf71 0 hgsc.bcm.edu;broad.mit.edu 37 2 29294007 29294007 + Missense_Mutation SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 GTGGTGGGTGGGCTTAGCACC 0.687 41 91 RIF1 55183 hgsc.bcm.edu;broad.mit.edu 37 2 152293371 152293371 + Missense_Mutation SNP C C A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 GCCCCGGGAACTCCCCGAATG 0.418 11 120 CHRNA1 1134 hgsc.bcm.edu;broad.mit.edu 37 2 175614763 175614763 + Missense_Mutation SNP C C T rs137852804 TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 GAGGCAATGACGAACACCATG 0.537 9 148 PLXNB1 5364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48461210 48461210 + Missense_Mutation SNP G G C TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 ATGGCCCCTGGGAAAGTGGTG 0.701 7 14 NIPBL 25836 hgsc.bcm.edu;broad.mit.edu 37 5 37008732 37008732 + Nonsense_Mutation SNP C C G TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 CAGGTATTCTCAAGATATGAA 0.274 12 224 C5orf34 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 43506030 43506030 + Nonsense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 AGGATATTTCCATTCCTCTGG 0.408 22 269 ADRB2 154 hgsc.bcm.edu;broad.mit.edu 37 5 148206922 148206922 + Silent SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 GGTACCGGGCCACCCACCAGG 0.537 20 288 GRM1 2911 hgsc.bcm.edu;broad.mit.edu 37 6 146720659 146720659 + Silent SNP G G C TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TGGCTCTGGGGTGCATGTTCA 0.488 9 128 RALYL 138046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 85774590 85774590 + Missense_Mutation SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 CCGCTGAAGCGTCCCAGAGTG 0.507 7 49 KLF4 9314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 110249405 110249405 + Missense_Mutation SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 GTCCTTTTCCGGGGCCACGAT 0.587 88 177 CHMP1A 5119 broad.mit.edu;ucsc.edu 37 16 89715806 89715806 + Missense_Mutation SNP C C T TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 ACTGCGTCTACGCGGGACGCC 0.597 70 151 CATSPER1 117144 broad.mit.edu;ucsc.edu 37 11 65790440 65790440 + Missense_Mutation SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 ATCATTTCCCGGAAGCCCTGA 0.557 69 115 CIC 23152 broad.mit.edu 37 19 42797299 42797300 + Frame_Shift_Del DEL TC TC - TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 TGCCCCAGAGTCTGAGCTTGAG 0.718 9 7 IDH2 3418 hgsc.bcm.edu 37 15 90628591 90628591 + Silent SNP G G A TCGA-DH-5141-01A-01D-1468-08 TCGA-DH-5141-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b77c396b-3f9c-4f1a-864e-f92793906b9d 8ab5bff0-41b4-493c-9626-d706d1c6aa38 AGACCAGGACGGACGTCATCA 0.642 6 6