Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ZMYND11 10771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 285431 285431 + Silent SNP A A G TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CTGATGCCCAATTGCTTCTCC 0.348 91 149 MRPL43 84545 hgsc.bcm.edu;ucsc.edu 37 10 102741298 102741298 + Missense_Mutation SNP T T A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 ACTGAACTGATATCTGAAGAA 0.398 48 213 LRRC4C 57689 hgsc.bcm.edu;broad.mit.edu 37 11 40136683 40136683 + Missense_Mutation SNP A A G TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 ATTTGGAGTAATCCAAGATAC 0.493 188 171 CFL1 1072 hgsc.bcm.edu;broad.mit.edu 37 11 65623202 65623202 + Splice_Site SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CTCGGGGGCCCTGGACAGAAA 0.542 6 89 ARNTL2 56938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 27542188 27542188 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CAACTTTCTTCTTTTGATATT 0.323 55 110 KRT86 3892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52698737 52698737 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CGCCTACCTCCGCAAATCAGA 0.597 204 253 ESPL1 9700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 53680351 53680351 + Silent SNP A A G TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TCACAAAACTAGGTGGCCTCA 0.542 134 139 CTSG 1511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 25043477 25043477 + Missense_Mutation SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CGTTCCCGCCGGTCCCCCACA 0.617 42 51 EXOC5 10640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 57684716 57684716 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 ATGCCAGTATCCAATTTCATC 0.294 45 62 MAX 4149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65544747 65544747 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 GATTTGGGCCCGGGATGCCTG 0.498 53 74 ADAM20 8748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 70989595 70989595 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 ATGAACCATACTGGCACACTT 0.463 269 413 TEX9 374618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 56686922 56686922 + Missense_Mutation SNP C C G TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TATGAGACAGCAGCGAACAAT 0.284 12 79 HEATR6 63897 hgsc.bcm.edu;broad.mit.edu 37 17 58133572 58133572 + Silent SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TCATTGAAAAGTAGCCCCTTG 0.453 10 166 CLEC4M 10332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7830088 7830088 + Missense_Mutation SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TGGCCATGGCGCCCTGGTGCT 0.632 96 117 ZNF506 440515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 19906098 19906098 + Missense_Mutation SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CATTTATAGCGTTTCTCTCCA 0.338 6 123 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78429848 78429848 + Splice_Site SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 GTCCCATCATCTTCAAAACAA 0.363 136 20 KIF16B 55614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 16360615 16360615 + Missense_Mutation SNP T T C TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TCTTCAAATTTTTCCTTCTCC 0.498 40 267 PREB 10113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27355105 27355105 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CACCTGACATCGAGGCAGGAG 0.617 146 229 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 ATAAGCATGACGACCTATGAT 0.393 72 87 MKRN2 23609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 12613687 12613687 + Missense_Mutation SNP A A G TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TGCCATCAGGAGTGGCCTTGA 0.627 57 59 TTC21A 199223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 39170636 39170636 + Missense_Mutation SNP T T C TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CGCATCACCATTGCCAACGTG 0.522 70 83 FBXL7 23194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 15937211 15937211 + Silent SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TCCAGGACTGCGAGGTCTCCG 0.607 18 51 MTX3 345778 hgsc.bcm.edu;broad.mit.edu 37 5 79282781 79282781 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 ACCTCCAAGACTAAGCCTAAA 0.363 8 158 VPS52 6293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33235064 33235064 + Silent SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TGAAAATGGTGTTCCTGCTGC 0.562 69 103 MRPL2 51069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 43023893 43023893 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 GATGATCCAGCGTTTCCGGCT 0.537 56 90 NOTCH1 4851 hgsc.bcm.edu;ucsc.edu 37 9 139393712 139393712 + Splice_Site SNP C C A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 GGATCAGGATCTGGGCAACAG 0.662 6 65 DLG3 1741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69670626 69670626 + Silent SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CCCCTGACTACGCCAGCAGTA 0.532 22 122 AMMECR1 9949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 109444269 109444269 + Missense_Mutation SNP T T C TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 GGTCTGTATATGGTCCCATCC 0.373 147 178 GPC3 2719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 132887716 132887716 + Silent SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TGCAGTAACCGCCACAGGGTT 0.483 194 196 GPR50 9248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 150349210 150349210 + Missense_Mutation SNP C C A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CCTCTGGCCACCCTAAGCCCC 0.582 124 160 GDI1 2664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153668416 153668416 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 TGACGTCTACCGGAAGTTTGA 0.577 311 551 DYX1C1 161582 broad.mit.edu;ucsc.edu 37 15 55731774 55731774 + Silent SNP T T C TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CTTGTTTGTGTAGCCACTAGA 0.343 14 113 NOTCH1 4851 broad.mit.edu;ucsc.edu 37 9 139418369 139418369 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 GGCGTTCTTGCAGGGGGTGCT 0.677 3 15 AZU1 566 broad.mit.edu;ucsc.edu 37 19 831737 831737 + Missense_Mutation SNP G G A TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CACCCCCCTCGTCTGCGAGGG 0.706 21 25 ATRX 546 broad.mit.edu;ucsc.edu 37 X 76949414 76949414 + Missense_Mutation SNP A A G TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CTCTGGCTGTACAATCACTGT 0.348 85 213 CIC 23152 broad.mit.edu;ucsc.edu 37 19 42799059 42799059 + Missense_Mutation SNP C C T TCGA-DH-5144-01A-01D-1468-08 TCGA-DH-5144-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b8626578-2105-4176-ad8c-5a2327743fa0 19e3a81b-ecb5-47d7-8d22-e1c55b6a25b7 CCGTGAGGTGCGCCAGAAGAT 0.632 46 13