Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PPIF 10105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 81113478 81113478 + Missense_Mutation SNP T T C TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 ATGGCAAGCATGTTGTGTTCG 0.502 46 155 CTR9 9646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 10783517 10783517 + Silent SNP C C T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 AAAATGGTGTCCAGCTTCTTT 0.343 12 67 SYTL2 54843 hgsc.bcm.edu;ucsc.edu 37 11 85436182 85436182 + Missense_Mutation SNP C C T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GGGCTACATACTGGCTGTACT 0.463 23 94 BORA 79866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 73303185 73303185 + Missense_Mutation SNP A A C TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 AATCTCCATGAACAAACTCTC 0.328 67 328 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105413659 105413659 + Missense_Mutation SNP C C T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 ATCCACCTGGCCAGCCTGGAC 0.607 90 259 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GCACAAACACGCACCTCAAAG 0.542 19 20 SOGA2 23255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 8825636 8825636 + Missense_Mutation SNP G G T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 CCATCGAGAAGGTGCAGGCCA 0.602 9 26 SERPINB12 89777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 61225658 61225658 + Missense_Mutation SNP A A T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 AACAAACAAAAAGTGCTGGCT 0.463 25 84 ADC 113451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 33560160 33560160 + Missense_Mutation SNP G G C TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 TTTCACATTGGCAGTGGCTGT 0.587 26 103 COL24A1 255631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 86590808 86590808 + Missense_Mutation SNP G G T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 ATTAGTAATTGTATCTTGTTT 0.348 16 66 C1orf65 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 223568185 223568185 + Missense_Mutation SNP C C A TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 AACAAAGTTTCCAGCGGTCCC 0.607 15 64 KANSL3 55683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 97267954 97267954 + Missense_Mutation SNP C C T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GGGCTTCCCACCAGGAGTGGC 0.617 8 19 FASTKD1 79675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170428527 170428527 + Missense_Mutation SNP G G C TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 AGGAAAACAGGTGTTTTTTTC 0.373 10 50 CDH12 1010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 21752212 21752212 + Silent SNP G G A TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 CCCCGATGTCGAAAGCCTGGG 0.463 16 94 PLCXD3 345557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 41381990 41381990 + Silent SNP G G T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 TAGCTTTGGGGGTCAGCACCA 0.463 41 153 WWC1 23286 hgsc.bcm.edu;broad.mit.edu 37 5 167858267 167858267 + Missense_Mutation SNP G G A TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GAATATCCGCGTGGCTGTCCT 0.532 7 134 HIST1H1C 3006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 26056346 26056346 + Missense_Mutation SNP G G A TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GAGTTTAAAGGAGCCAGAAGC 0.527 48 177 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 4259754 4259754 + Silent SNP G G T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 TGAGCAAGGTGGTGACCGTGG 0.567 22 134 RADIL 55698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 4855893 4855893 + Silent SNP G G A TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GCAGTGTCCCGGAGAAGAAGA 0.657 18 54 GLIS3 169792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 3828287 3828287 + Silent SNP G G C TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 CTTCGGTGTAGACAGAGGAGA 0.562 11 30 COL4A5 1287 hgsc.bcm.edu;broad.mit.edu 37 X 107840717 107840717 + Silent SNP T T C rs143442986 TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 TGGGTTCCCCTGGAGCTCCAG 0.537 6 100 IGSF10 285313 broad.mit.edu;ucsc.edu 37 3 151163027 151163027 + Nonsense_Mutation SNP G G T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 AGCAATTTCTGAGTATGGTTT 0.438 21 193 SLC4A4 8671 broad.mit.edu;ucsc.edu 37 4 72121038 72121038 + Silent SNP A A C TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 GGAAAAGGAGAGAATCTCTGA 0.448 6 131 IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 ATAAGCATGACGACCTATGAT 0.393 25 75 ZC3H12B 340554 broad.mit.edu;ucsc.edu 37 X 64719804 64719804 + Missense_Mutation SNP G G T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 CACGGCCCAAGCCTTGAAAAT 0.443 65 287 LY9 4063 broad.mit.edu;ucsc.edu 37 1 160783602 160783602 + Nonsense_Mutation SNP C C T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 TACCGTCTCCCGAACACCATG 0.572 65 279 BTNL8 79908 broad.mit.edu;ucsc.edu 37 5 180338425 180338425 + Missense_Mutation SNP C C T TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 CTGGTTCCCCCGGCCCACAGC 0.527 80 374 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939056 76939060 + Frame_Shift_Del DEL ATTTA ATTTA - TCGA-DU-5851-01A-13D-1893-08 TCGA-DU-5851-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c01a846-2703-42fc-86d0-4bf042d39576 3a33d274-022d-4113-bbe9-559ebc898229 TTGAAGAAATATTTAATTTTACAGA 0.351 75 355