Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	39882077	39882077	+	Silent	SNP	G	G	A			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	GCAACTACCTGGGCCACTATA	0.602	7	26
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791757	42791757	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	CAAGCGGCACCGGGCCCTGGT	0.612	10	15
LYPD5	284348	hgsc.bcm.edu;ucsc.edu	37	19	44303048	44303048	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	ACCGAGTAGTCTGGCGGCAGC	0.692	6	3
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56369920	56369920	+	Silent	SNP	C	C	T			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	GTGCCGAGGGCCCGACTCCGC	0.562	13	19
ACTL8	81569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	18149709	18149709	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	CCCATCGAGCGGGGCCGCATC	0.597	28	23
RAB3B	5865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	52442779	52442779	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	ACCATCTGTCACTGAAGCCAT	0.473	12	14
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	45996261	45996261	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	CTATGTGGTCGGGGGCGTGGT	0.612	24	281
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	ATAAGCATGACGACCTATGAT	0.393	29	50
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	22390382	22390382	+	Missense_Mutation	SNP	T	T	C			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	ATCCTGATGATTTATTTCGCC	0.433	26	63
TRMT10A	93587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	100479223	100479223	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	ACCATCAAGTGATCAAAACTA	0.338	10	20
IRX2	153572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	2749842	2749842	+	Silent	SNP	G	G	A			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	CCGCGCTGCCGTACGGGTGGT	0.672	20	24
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	67591097	67591097	+	Missense_Mutation	SNP	A	A	G			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	CAAACGTATGAACAGCATTAA	0.373	30	71
SPZ1	84654	hgsc.bcm.edu;ucsc.edu	37	5	79616416	79616416	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	AACAAACCTGCCTGTTAGTTT	0.363	30	48
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140249978	140249978	+	Silent	SNP	T	T	C			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	GGGATGGGGGTTCGCCTTCTC	0.617	40	94
ERCC6L2	375748	broad.mit.edu;ucsc.edu	37	9	98775227	98775227	+	Silent	SNP	A	A	G			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	AAGTTCTTTCAGGGCCCATGG	0.398	9	20
TNR	7143	broad.mit.edu;ucsc.edu	37	1	175336428	175336428	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	GTGCCAGGTACCAGATCTATC	0.478	5	25
FOXK1	221937	broad.mit.edu;ucsc.edu	37	7	4796757	4796757	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	ACAGGCATTCCGGAAACGGAG	0.577	38	82
TMEM132B	114795	broad.mit.edu;hgsc.bcm.edu	37	12	125834002	125834003	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DU-5870-01A-11D-1705-08	TCGA-DU-5870-10A-01D-1705-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71d8a2ac-861c-4348-a5f7-b03e1a6ee007	8ecfbf90-3948-4e91-9eae-d052e56fdb4f	GTGCAGTGACAGAGAGTCGAGG	0.485	33	72