Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SLC16A12 387700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 91192821 91192821 + Nonstop_Mutation SNP T T C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 AGGCCTTTGGTCATGTGAGGC 0.478 23 53 OR5M10 390167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56345128 56345128 + Missense_Mutation SNP C C G TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 AGGATCTTCTCTAGCACTGGG 0.463 17 114 XYLT1 64131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 17228396 17228396 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 GCGGGCAAAGGAGTGGTACAA 0.627 20 58 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 GCACAAACACGCACCTCAAAG 0.542 23 6 EPG5 57724 hgsc.bcm.edu;broad.mit.edu 37 18 43447537 43447537 + Silent SNP T T C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 CTGTTTGGTCTACCAGTTGAA 0.428 9 169 BSG 682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 578038 578038 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TGCCGGGCCAGCAACGACCCG 0.682 12 10 ZNF77 58492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 2933527 2933527 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TTGAAGCGATGCGAGATACCT 0.493 18 81 GIPC3 126326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 3589856 3589856 + Missense_Mutation SNP C C T TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 GGAGGCATCTCGGAAGGTTGA 0.657 20 98 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15276774 15276774 + Missense_Mutation SNP G G C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 CGTGCCCCAAGCTGAGCCCCC 0.612 5 32 LILRB4 11006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55178179 55178179 + Silent SNP C C T rs149652762 byFrequency TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 AGCCTGAGGACGGGGTGGAAA 0.607 50 58 IL23R 149233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 67672664 67672664 + Missense_Mutation SNP T T C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 CATAATTTATTGGGATAGTCA 0.353 10 43 RPRD1B 58490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 36694642 36694642 + Missense_Mutation SNP A A C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TTGTCGGAGAAGGAGAAAAAA 0.488 15 120 ITGA6 3655 hgsc.bcm.edu;ucsc.edu 37 2 173366539 173366539 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TCATTATGATGCCACATATCA 0.363 34 71 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G C rs121913499 TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TAAGCATGACGACCTATGATG 0.398 40 52 GPRIN3 285513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 90169964 90169964 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TTCTTTACACGTATGCTGGGC 0.468 17 108 RXFP1 59350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 159533494 159533494 + Silent SNP A A C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 CATTTTATGGACTAAATTCTC 0.274 8 22 SLCO4C1 353189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 101585438 101585438 + Silent SNP C C T TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 AATATGATCGCGAACAGTTAC 0.408 37 35 ADRB2 154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 148207421 148207421 + Missense_Mutation SNP C C T TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TCTGTGCCTGCGCAGGTCTTC 0.493 6 43 PIWIL2 55124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 22173813 22173813 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 AGAGGCATGCGCTCCGTGGTT 0.413 21 25 CNTFR 1271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 34556300 34556300 + Missense_Mutation SNP T T C TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 AGAAAGAACTTGAGAGGAAAA 0.607 9 22 AMER1 139285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 63411822 63411822 + Missense_Mutation SNP C C T TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 TCCCCAGGGGCTAGGCCAGGA 0.537 26 38 ATP11C 286410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 138850563 138850563 + Missense_Mutation SNP T T A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 CATCTATGATTAATCCATATT 0.313 20 61 DQX1 165545 broad.mit.edu;ucsc.edu 37 2 74747092 74747092 + Missense_Mutation SNP G G A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 GTCACCATCCGTGTGTTCCAG 0.512 11 115 FAM58A 92002 broad.mit.edu;ucsc.edu 37 X 152853848 152853848 + Missense_Mutation SNP T T A TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 GTCCATGGTATAAATCTGAAT 0.483 31 134 HMCN1 83872 broad.mit.edu;ucsc.edu 37 1 186105940 186105940 + Missense_Mutation SNP C C T TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 CTGGGATGACCGGGTTAACGT 0.428 10 48 PCM1 5108 broad.mit.edu;ucsc.edu 37 8 17796415 17796415 + Missense_Mutation SNP A A G TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 GGATCAGCACAGTGTAAAGAG 0.438 5 46 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76940443 76940447 + Frame_Shift_Del DEL TCCAT TCCAT - rs45572441 TCGA-DU-5871-01A-12D-1705-08 TCGA-DU-5871-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 284eb475-87a9-4787-8fb6-acbd64a5e192 ffbf073f-cbe7-420a-954f-b6b9c39a9bd8 ACATTGTTCATCCATTCCATCTGAG 0.317 36 72