Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MKI67 4288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 129906452 129906452 + Missense_Mutation SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 AGAGCCTGGGCCTTTTCCTTA 0.483 19 88 OR52M1 119772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4567291 4567291 + Missense_Mutation SNP A A T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TCCAATCCTCAATCCCATTGT 0.453 30 27 ARAP1 116985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 72396719 72396719 + Missense_Mutation SNP C C G TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TCAGACGTTGCGCAGAAGCTG 0.607 12 28 FGD6 55785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 95531311 95531311 + Missense_Mutation SNP A A G TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 AAATTCTCTAACAACAGCAGC 0.328 51 76 CHST11 50515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 105151362 105151362 + Missense_Mutation SNP G G C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GCAAGTACGAGACACTGGAAG 0.532 10 17 TBX5 6910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 114793418 114793418 + Silent SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TCCTTGGCACGCCATGAGAGT 0.602 19 21 WDR66 144406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 122399967 122399967 + Silent SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GCTATCCCACCTGCATGGTCT 0.498 18 102 TUBA3C 7278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 19751659 19751659 + Missense_Mutation SNP T T C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TGAGAGCCGCTCCATGAGCAG 0.587 35 53 MYO5C 55930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 52553129 52553129 + Missense_Mutation SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TTAATTCTCTCCACAATGAAG 0.473 45 66 IL16 3603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 81598375 81598375 + Missense_Mutation SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GGCCATCCTCCGCCAAGCTCG 0.582 19 115 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GCACAAACACGCACCTCAAAG 0.542 23 10 KIF2B 84643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 51900796 51900796 + Missense_Mutation SNP G G T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TGGATGTGAGGGTCCCCAGCA 0.587 27 41 SLC38A10 124565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 79249788 79249788 + Missense_Mutation SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 ACACAGCAGCGTGCTCAGGGC 0.612 17 40 CREB3L3 84699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 4171094 4171094 + Missense_Mutation SNP C C G TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TAAGGTCCCTCTTGGAGCAAC 0.612 25 40 LRFN1 57622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39798915 39798915 + Silent SNP G G C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 ACACCTTATAGCGGATCATGA 0.657 6 19 SPTBN4 57731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41063165 41063165 + Silent SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TCTTCAGTGACGCCCGAGAGC 0.657 20 32 EIF4G3 8672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 21181494 21181494 + Missense_Mutation SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CTTTGCTCCACCACTGCTGCC 0.473 50 68 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 237872331 237872331 + Missense_Mutation SNP T T C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CCTAGATGAGTTCACCACACT 0.463 9 12 TBX1 6899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 19751681 19751681 + Silent SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GCTCCAGGTACGCCTTCCACA 0.667 11 19 NCKAP5 344148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 133489408 133489408 + Missense_Mutation SNP G G C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GCTATCTGCAGGGCGCTGGCC 0.587 31 51 FASTKD1 79675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170411653 170411653 + Missense_Mutation SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 AATTCTCTAAGTTTCGCAAAA 0.308 22 24 ZNF385B 151126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 180634316 180634316 + Missense_Mutation SNP T T A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GCGGTGGGATTTGCCGTTGGA 0.567 14 32 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 ATAAGCATGACGACCTATGAT 0.393 23 57 BARD1 580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 215610535 215610535 + Missense_Mutation SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CAGCCCACTGCCTATAAGTAC 0.393 24 183 UGT2B4 7363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 70352368 70352368 + Missense_Mutation SNP T T G TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CAGCCGAGTATTGAGTCCTAA 0.343 64 126 ANKRA2 57763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 72849256 72849256 + Silent SNP T T C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GGGCTACAGCTAGATCCATAG 0.363 21 32 TFAP2D 83741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 50683278 50683278 + Silent SNP G G T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 AAAGACTCCTGCCAGGGCCCA 0.632 42 69 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100679845 100679845 + Missense_Mutation SNP C C A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CTCCCGTTGACAACAGCACAC 0.473 94 130 GPR64 10149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 19027859 19027859 + Missense_Mutation SNP A A T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CGTGTTTGAAAAGTTCAGCTG 0.398 51 57 POLA1 5422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 24735546 24735546 + Missense_Mutation SNP G G C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GGGACAAAGAGAGTGAGCCAG 0.498 16 27 TRO 7216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54955789 54955789 + Missense_Mutation SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 AACGAGCACAGTCTTCAGTAG 0.567 24 36 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76909629 76909629 + Nonsense_Mutation SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TTAATACGTCGCCTTTTCTTT 0.328 50 97 APOL4 80832 broad.mit.edu;ucsc.edu 37 22 36587386 36587386 + Nonsense_Mutation SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GGTACATATCGCCAAGCAATC 0.483 20 39 EEF1D 1936 broad.mit.edu;ucsc.edu 37 8 144663399 144663399 + Splice_Site SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GGGGCCTCACCGCCACGCAGA 0.692 5 25 ZNF638 27332 broad.mit.edu;ucsc.edu 37 2 71658529 71658529 + Missense_Mutation SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TCTTCTTCAGGCAAATCAGTG 0.413 4 34 THSD7B 80731 broad.mit.edu;ucsc.edu 37 2 138400162 138400162 + Missense_Mutation SNP T T C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 GACCCCCTGCTACAGCTGGGT 0.488 30 75 DCAKD 79877 broad.mit.edu;ucsc.edu 37 17 43101983 43101983 + Missense_Mutation SNP C C T TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 ACATGGCGGGCCATGCGGGCC 0.642 17 37 SEZ6 124925 broad.mit.edu;ucsc.edu 37 17 27286489 27286489 + Splice_Site SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CGCTGCACACGGCTGGAAGGC 0.602 15 45 SAT1 6303 broad.mit.edu;ucsc.edu 37 X 23801978 23801978 + Silent SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CAGAAGTGCCGAAAGAGCACT 0.542 20 30 HLA-DOA 3111 broad.mit.edu;ucsc.edu 37 6 32975239 32975239 + Silent SNP G G C TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CTCCCTCAGTGACAGTTTGGC 0.582 47 91 TRBV6-6 28601 broad.mit.edu;ucsc.edu 37 7 142162187 142162187 + RNA SNP G G A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 TTCAGGATGCGGAATTTTGGG 0.517 22 40 SCGN 10590 broad.mit.edu;ucsc.edu 37 6 25682193 25682193 + Missense_Mutation SNP C C G TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 AGATTTTTGACAGAAATAAAG 0.353 16 40 LIM2 3982 broad.mit.edu;hgsc.bcm.edu 37 19 51885677 51885678 + Frame_Shift_Ins INS - - A TCGA-DU-6396-01A-11D-1705-08 TCGA-DU-6396-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx cb4a697c-3444-49ed-9085-cec75607f61d 2c1dd78a-2e86-4815-b003-63d5cfc62e38 CTCACTTGAGGAAAAAAACATG 0.564 30 30