Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count DDX24 57062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 94528925 94528925 + Missense_Mutation SNP G G A TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CTGCAACACCGCATGAATCAT 0.458 23 77 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29663350 29663350 + Splice_Site SNP G G C TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 TCTTCAACTAGATTACAGATC 0.328 6 72 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48703623 48703623 + Silent SNP A A G TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GAAGCAGCTTAGAGTTGGACA 0.642 13 32 SSTR2 6752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 71166516 71166516 + Missense_Mutation SNP C C G TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CTGAATGAGACCACGGAGACC 0.547 11 54 VAV1 7409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6833209 6833209 + Missense_Mutation SNP C C T TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 AACATCTATCCGGAGAATGCC 0.438 16 28 OR7A5 26659 hgsc.bcm.edu;ucsc.edu 37 19 14938560 14938560 + Missense_Mutation SNP C C T TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GAAGGACAGCCGTACTACCAT 0.443 13 30 FLG 2312 hgsc.bcm.edu;broad.mit.edu 37 1 152282972 152282972 + Missense_Mutation SNP C C G TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CCTTGTCTTCCTCCAGTGCTG 0.572 17 211 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 ATAAGCATGACGACCTATGAT 0.393 38 59 OR5AC2 81050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 97806608 97806608 + Missense_Mutation SNP G G A TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 ATCTATTAACGCACTAATGAT 0.289 24 31 RETNLB 84666 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 108475916 108475916 + Silent SNP G G T TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CTAGACTGTTGAGAACATCCT 0.498 4 19 MRPL3 11222 hgsc.bcm.edu;broad.mit.edu 37 3 131190117 131190117 + Silent SNP A A C TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GAAAACCTTTACCAATACTGA 0.403 4 83 ALPK1 80216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 113352721 113352721 + Missense_Mutation SNP C C A TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CCCTTGACACCCTTCTCGCCT 0.493 18 46 FSTL5 56884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 162577517 162577517 + Missense_Mutation SNP T T C TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 TAGAATAATATTGTTCCTTTT 0.353 14 25 FSTL5 56884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 162577525 162577525 + Missense_Mutation SNP T T A rs61746784 TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 TATTGTTCCTTTTCCAGATAA 0.353 15 29 MCC 4163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 112439958 112439958 + Silent SNP G G T rs142794653 byFrequency TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CCTCGGCCACGGAGAGGCTGC 0.572 31 117 UBLCP1 134510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158697549 158697549 + Missense_Mutation SNP C C A TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 AGAAAACCTACTGAAAATTTC 0.333 9 85 RREB1 6239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 7229828 7229828 + Missense_Mutation SNP C C T TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CCACTGCAGGCGATCTTCAAG 0.642 47 264 GPR115 221393 hgsc.bcm.edu;broad.mit.edu 37 6 47682356 47682356 + Missense_Mutation SNP A A G TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GTGGTTTATCATAGGCTCTCA 0.458 22 337 KIT 3815 broad.mit.edu;ucsc.edu 37 4 55573431 55573431 + Missense_Mutation SNP T T A TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 TTATCCCAAGTCTGAGAATGA 0.403 20 49 OR4M1 441670 broad.mit.edu;ucsc.edu 37 14 20248557 20248557 + Missense_Mutation SNP G G T TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GGTCCAACTAGTCCTATTTGT 0.388 30 288 RUFY2 55680 broad.mit.edu;ucsc.edu 37 10 70141155 70141155 + Splice_Site SNP T T C TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 ATTCTCTACATCCTGCAATTT 0.358 77 122 FRMD4B 23150 broad.mit.edu;hgsc.bcm.edu 37 3 69230517 69230518 + Frame_Shift_Del DEL TT TT - TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CTCCTGACTCTTTGAGTAAACA 0.446 11 49 C8orf47 0 broad.mit.edu;hgsc.bcm.edu 37 8 99101783 99101784 + Frame_Shift_Ins INS - - A TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 TGAGAATCCACAAACTGCTGCA 0.52 10 28 SS18 6760 broad.mit.edu;hgsc.bcm.edu 37 18 23632625 23632626 + Frame_Shift_Del DEL AT AT - TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GTCTGGGACCATAGTTTCCCAT 0.426 32 125 FUBP1 8880 broad.mit.edu 37 1 78444677 78444678 + Frame_Shift_Del DEL AT AT - TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 GCACTGTTGAATAGTCTGCCAT 0.559 10 7 CIC 23152 ucsc.edu 37 19 42791721 42791721 + Missense_Mutation SNP C C G TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 CATCCGGCGGCCCATGAATGC 0.627 3 39 CIC 23152 ucsc.edu 37 19 42791790 42791790 + Missense_Mutation SNP G G T TCGA-DU-6397-01A-11D-1705-08 TCGA-DU-6397-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 678aeec7-2b41-46fc-b4c9-0c9f6b2018bb 60cfef6e-ae32-4680-83e6-f969464d5805 TCCCAACCAGGACAACCGGAC 0.612 3 39