Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count DCDC1 341019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 31312399 31312399 + Splice_Site SNP T T C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CAACAGATGGTCTAGAAGATA 0.338 14 21 SELPLG 6404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 109017462 109017462 + Missense_Mutation SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GCTTCCATGGCTGCTGGTGCA 0.622 10 42 ACIN1 22985 hgsc.bcm.edu;broad.mit.edu 37 14 23564434 23564434 + Missense_Mutation SNP C C G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CTCTACCCCTCGATTACCACT 0.592 8 110 GLOD4 51031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 685481 685481 + Silent SNP T T C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d AGTGCAGAGCTCTGCGAGCAG 0.662 5 18 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578177 7578177 + Splice_Site SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CAAACCAGACCTCAGGCGGCT 0.532 12 13 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578271 7578271 + Missense_Mutation SNP T T G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TCGGATAAGATGCTGAGGAGG 0.562 7 18 FBXO47 494188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 37107930 37107930 + Missense_Mutation SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TCATCCCAACCTGCTGTTAAG 0.423 15 50 AIM1L 55057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26650673 26650673 + Nonsense_Mutation SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CCTCGTAGTACCAGATGCAGC 0.622 24 54 SLC5A9 200010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 48703490 48703490 + Missense_Mutation SNP G G C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CTTCCTGCTGGCCATCTTCTG 0.572 6 40 TYW3 127253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 75204387 75204387 + Missense_Mutation SNP A A G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GTAGCTCTGAAGAAAGCAAAT 0.383 18 20 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 216496989 216496989 + Silent SNP A A C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d AATTTGGTCCAGGTGTCAGGA 0.373 44 120 CAD 790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27456961 27456961 + Missense_Mutation SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GGTGTGCATTCAGGTGATGCG 0.587 26 29 XDH 7498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 31588394 31588394 + Nonsense_Mutation SNP G G A TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d AGCATGCATCGCACAGGGCGG 0.572 44 106 ZEB2 9839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 145157730 145157730 + Missense_Mutation SNP C C G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CTCATTCGGCCATTTACAGAG 0.413 7 35 CNOT10 25904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 32754815 32754815 + Missense_Mutation SNP A A G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GCTGTCCTAGAAAAAATGATT 0.348 24 52 OR5K2 402135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 98217294 98217294 + Missense_Mutation SNP T T C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TCTATTTTTTTCCTATACATT 0.333 15 43 NFKBIZ 64332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 101572700 101572700 + Missense_Mutation SNP G G T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GGATGCAGATGGTGACACGTG 0.388 15 71 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936092 178936092 + Missense_Mutation SNP A A C rs121913274 TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GAAATCACTGAGCAGGAGAAA 0.353 8 33 EPHA5 2044 hgsc.bcm.edu;broad.mit.edu 37 4 66361196 66361196 + Missense_Mutation SNP T T C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TGGGTATAACTGTGAGGTGGA 0.463 12 124 RAD50 10111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 131930714 131930714 + Silent SNP T T A TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d AAGAGGAAATTGAAAAATCAT 0.368 12 72 HAVCR1 26762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 156482407 156482407 + Missense_Mutation SNP C C G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TTGGTCCAGACAATGCCATTT 0.478 10 28 KIF13A 63971 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 17764345 17764345 + Missense_Mutation SNP T T C TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d ACATACTCATTGACAGCACAG 0.493 9 25 SCIN 85477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 12668832 12668832 + Missense_Mutation SNP A A T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CCCAGAGGACAGATTATCTAC 0.413 26 74 AMER1 139285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 63410720 63410720 + Missense_Mutation SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TTCCCCATCCCGTTCCACATC 0.498 12 31 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 105167163 105167163 + Silent SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d ACTTGACAAACGAATGGGTAG 0.418 55 99 CNGA2 1260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 150909279 150909279 + Missense_Mutation SNP C C G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GAAATTTGAACTATTTGTCTT 0.527 50 145 ADAMTS19 171019 broad.mit.edu;ucsc.edu 37 5 129039955 129039955 + Silent SNP C C A TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GTGGCAAAGGCATACGTCATC 0.428 65 109 EIF4B 1975 broad.mit.edu;ucsc.edu 37 12 53431273 53431273 + Missense_Mutation SNP A A G TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TCCAACTTCTAAACCTCCCAA 0.478 14 19 PRDM5 11107 broad.mit.edu;ucsc.edu 37 4 121631494 121631494 + Silent SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d CTCCAGTGTGCGTCCTCTTGT 0.488 8 31 IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d ATAAGCATGACGACCTATGAT 0.393 20 51 CROCC 9696 broad.mit.edu;ucsc.edu 37 1 17250936 17250936 + Missense_Mutation SNP G G A TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TGCCGAGCGCGATGAGCTCGC 0.652 9 25 CPVL 54504 broad.mit.edu;ucsc.edu 37 7 29134736 29134736 + Nonsense_Mutation SNP C C T TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GCGTTGTGGTCCAGGGGAAGT 0.507 11 46 RIPK1 8737 broad.mit.edu;hgsc.bcm.edu 37 6 3105782 3105782 + Frame_Shift_Del DEL G G - TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d GAGGAGTCCTGGTTTGCTCCT 0.527 47 111 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76937745 76937745 + Frame_Shift_Del DEL T T - TCGA-DU-7298-01A-11D-2024-08 TCGA-DU-7298-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f04a9dc1-2a7d-464f-9e72-92e2afe0d451 004f58de-822a-4232-8784-e3a1bc15783d TTTTAATTACTTTTTTCTTAA 0.338 63 108