Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ARMC3 219681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 23292319 23292319 + Silent SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ACATAATTAACGATGGATTCT 0.323 59 73 ATG16L2 89849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 72528829 72528829 + Missense_Mutation SNP G G C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CTCAGACCAAGTCCCATCACT 0.587 15 40 BCL9L 283149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 118772576 118772576 + Missense_Mutation SNP T T C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ATGGCATTCATGGGCACCTCC 0.622 14 29 WNK1 65125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 994382 994382 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GGTCCTAAGCCTCCAGCTGTA 0.507 29 86 PSMC6 5706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 53175072 53175072 + Missense_Mutation SNP A A G TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GAAAAGTCTGAAAATGATCTG 0.353 25 21 COPS2 9318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 49447771 49447771 + Missense_Mutation SNP G G C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CTCCATGTCAGACATCTTGGC 0.557 49 56 PDE8A 5151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85610300 85610300 + Missense_Mutation SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 TGCAGGGCATGTGAAAAAGCA 0.383 45 41 DHX38 9785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 72132924 72132924 + Missense_Mutation SNP C C T rs148934675 TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GGGTCCACCCCGCGTCTGTCC 0.617 20 36 ZFHX3 463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 72993684 72993684 + Missense_Mutation SNP C C A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CTCTCCTCGTCCCCCTCCTCA 0.687 23 117 PLCG2 5336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 81953235 81953235 + Missense_Mutation SNP C C A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CTGCGCTACCCCGTGACCCCC 0.517 28 72 METTL16 79066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2324130 2324130 + Silent SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CCTTCATCACGGACGCCAGCA 0.453 104 237 ALDH4A1 8659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19209803 19209803 + Silent SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 TGCTGTTGGTGCTCGGGGGCA 0.647 21 97 ALDH4A1 8659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19209838 19209838 + Missense_Mutation SNP G G C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 TGCCCCTCCAGCTCCACCGCA 0.642 24 69 TMEM39B 55116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 32542835 32542835 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ACCGTTCTCACGGCAACAGGC 0.592 19 187 TOR1AIP1 26092 hgsc.bcm.edu;ucsc.edu 37 1 179876983 179876983 + Missense_Mutation SNP G G C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CTCATGATAAGCAACCTTCAG 0.328 4 38 FAM5C 339479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 190067492 190067492 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CGGGAAGGGTCAATAAACTCC 0.428 38 59 HSPA13 6782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 15748040 15748040 + Silent SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GAGTTCCTCCGCCCAAGTCTA 0.483 37 116 BCR 613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 23631729 23631729 + Silent SNP C C G TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CCCTGACATCCGTGGAGCTGC 0.572 24 36 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 141274478 141274478 + Missense_Mutation SNP C C G TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 TTCATCACGTCCATCCTCACA 0.328 35 97 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 196877622 196877622 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ATCAACTAAACGTAATTTTCT 0.279 20 26 CACNA1D 776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 53837571 53837571 + Missense_Mutation SNP G G C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GGAATGCTACGAGGATGACAG 0.617 97 215 SLITRK3 22865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 164906713 164906713 + Missense_Mutation SNP G G T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GCACTGGTTGGTGCCCCAATA 0.527 11 34 GABRA1 2554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 161324195 161324195 + Missense_Mutation SNP G G C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CCCTAATTTGGCCAGGGGCGA 0.458 44 138 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55211008 55211008 + Missense_Mutation SNP A A T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ACCATCCAGGAGGTGGCTGGT 0.448 32 90 SEMA3E 9723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 83119551 83119551 + Missense_Mutation SNP G G T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 AAATCCAAAAGGGCTATGAAA 0.413 20 59 RNF19A 25897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 101287238 101287238 + Missense_Mutation SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GTTCTCAAACGTAAGCTCTGG 0.418 27 77 SLC45A4 57210 hgsc.bcm.edu;broad.mit.edu 37 8 142231748 142231748 + Missense_Mutation SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ATGAAGGGCCGCCGGCGGCCC 0.617 6 88 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144945911 144945911 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GGGCCGGCCCCGGAACTTCCC 0.677 8 17 APBA1 320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 72131516 72131516 + Missense_Mutation SNP G G T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CAGCTCGGGCGCGTCCCCTAT 0.721 15 17 APOO 79135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 23899066 23899066 + Missense_Mutation SNP T T A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GACCTCTGAATTACCTGAAAT 0.478 36 47 HLTF 6596 broad.mit.edu;ucsc.edu 37 3 148792096 148792096 + Silent SNP A A C TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 TCATATGCAGAGGCATGGTAA 0.363 34 23 LUZP4 51213 broad.mit.edu;ucsc.edu 37 X 114541268 114541268 + Missense_Mutation SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GAGAGATCTCGTGGCCACTGA 0.428 23 114 PGM3 5238 broad.mit.edu;ucsc.edu 37 6 83884095 83884095 + Missense_Mutation SNP G G T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GTTCTGACCTGGTTAAACAAG 0.383 3 7 KIF1B 23095 broad.mit.edu;ucsc.edu 37 1 10386237 10386237 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 ACTTTTTCCACGGCCGATTCC 0.572 21 250 DNAH11 8701 broad.mit.edu;ucsc.edu 37 7 21640450 21640450 + Missense_Mutation SNP C C T TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 GAAGCATTTTCTCTTGTATGG 0.438 57 160 KIF19 124602 broad.mit.edu;ucsc.edu 37 17 72343952 72343952 + Missense_Mutation SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 AGTGATGATCGCTCACATCAG 0.627 3 8 DCAF12L1 139170 broad.mit.edu;ucsc.edu 37 X 125686452 125686452 + Missense_Mutation SNP G G A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CGAGCGATACGTCGCCGGCCG 0.721 21 54 PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89717715 89717716 + Frame_Shift_Ins INS - - A TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 CCTCAGCCGTTACCTGTGTGTG 0.406 48 56 BACH1 571 broad.mit.edu;hgsc.bcm.edu 37 21 30699512 30699513 + Frame_Shift_Del DEL TA TA - rs145991657 TCGA-DU-8158-01A-11D-2253-08 TCGA-DU-8158-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx f9019256-e13e-41ea-ab8b-f4d1e8715998 75357e93-258a-49ac-a33f-0fc24dbf88d2 TTCACAACATTAAGTTCTGTCA 0.436 29 52