Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR10A4	283297	hgsc.bcm.edu;broad.mit.edu	37	11	6898019	6898019	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	TCCTCATCATCCTGGTCACTA	0.453	10	143
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	57861814	57861814	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	TGCACCAAACGCTATACAGAT	0.542	12	114
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	30001004	30001004	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	TCAAATGGTCGGGCAGAACTT	0.403	82	202
GCNT3	9245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	59911328	59911328	+	Silent	SNP	G	G	A	rs139760962		TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	CAGGGAATGCGTACATTGTGG	0.408	25	173
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	A	rs28934576	by1000genomes	TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	GGCACAAACACGCACCTCAAA	0.542	15	11
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	19283952	19283952	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	GGAAAGCGACCTGCACCAGAT	0.582	20	112
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu	37	17	19284535	19284535	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	CGCATCTCAGCAGCTGCTGCC	0.622	6	81
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	27434129	27434129	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	GTAGTTACGCCCGTGTTTCTT	0.612	52	150
CLCNKA	1187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	16352610	16352610	+	Silent	SNP	A	A	G			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	AAGGTTCTGGAATCCCGGAGC	0.552	67	433
CAPN2	824	hgsc.bcm.edu;broad.mit.edu	37	1	223900426	223900426	+	Silent	SNP	C	C	G			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	TCAAGTACCTCAACCAGGACT	0.716	11	20
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248458716	248458716	+	Silent	SNP	C	C	T			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	AGTACATGGGCCTGTGGAGCC	0.527	8	41
DYNC2LI1	51626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	44028017	44028017	+	Missense_Mutation	SNP	G	G	A	rs141895414		TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	CTAAAAATACGTGGAGTTATC	0.313	6	48
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	ATAAGCATGACGACCTATGAT	0.393	26	79
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	39227182	39227182	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	AGGAACAAAGGCATTATGGGG	0.622	10	27
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	agcagcagcaacagcagcagc	0.731	4	36
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76814188	76814188	+	Nonsense_Mutation	SNP	A	A	C			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	GTCCAAAGCGATAAACTCTGA	0.338	10	45
ATRX	546	hgsc.bcm.edu;ucsc.edu	37	X	76944328	76944328	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DU-8163-01A-11D-2253-08	TCGA-DU-8163-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a240da2-0f4a-4b1c-b220-b220ad4d5749	216b595d-09da-487c-b319-fc9748c68efd	ATAAGAACTTGCAATGAAGGG	0.383	10	37