Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR52I2 143502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4608347 4608347 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GTGGACATTGTTATGGCCTCC 0.483 86 225 OR52E8 390079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5878650 5878650 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb ATTTCTTTGGTATTGAACCAG 0.473 66 108 ZDHHC13 54503 hgsc.bcm.edu;ucsc.edu 37 11 19184936 19184936 + Missense_Mutation SNP C C G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGCAACTGATCCAGGCTTCAC 0.348 3 14 ANO1 55107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 69950226 69950226 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AAGAGACTCTCCTATCCCTTC 0.542 5 6 SHANK2 22941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 70319315 70319315 + Missense_Mutation SNP G G C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb ACATCTGAGAGAGCGGGAGAA 0.602 39 77 MMP8 4317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 102587093 102587093 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TGTCAAACTGGGGTCACAGGG 0.363 56 89 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu 37 12 43822162 43822162 + Missense_Mutation SNP T T A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb ATAGCTTGGCTGCACAGGGGA 0.468 4 82 OR9K2 441639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 55524375 55524375 + Missense_Mutation SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGTTGTGAGTGTGCTGTATGG 0.438 30 135 LRRIQ1 84125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 85521757 85521757 + Missense_Mutation SNP A A T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AAGGAAAAAGAGAAAATATTG 0.353 11 90 ATP6V0A2 23545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 124228804 124228804 + Missense_Mutation SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TGGAGACTTCGGACATGGCTT 0.373 28 98 ERO1L 30001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 53138414 53138414 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCCTTCTGTGTTTCCTCACTT 0.284 23 11 DMXL2 23312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 51773679 51773679 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GTTAATTTTATCAACAAAGTT 0.378 6 43 ZNF200 7752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 3282875 3282875 + Silent SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TCTCTTGTTCCTTTTGGACTC 0.478 19 42 USP31 57478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 23085199 23085199 + Missense_Mutation SNP A A G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TTCTTACAGTACGCTGCCAAA 0.542 6 29 SBK1 388228 hgsc.bcm.edu;broad.mit.edu 37 16 28331420 28331420 + Silent SNP G G C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGGACACGGTGAAGCGCTGTG 0.716 3 9 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCACAAACACGCACCTCAAAG 0.542 5 16 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578458 7578458 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCCATGGCGCGGACGCGGGTG 0.622 42 90 WDR16 146845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 9546373 9546373 + Missense_Mutation SNP A A G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GTTTGGGATTATAATGAGGGT 0.433 10 42 PTPRM 5797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 8113636 8113636 + Missense_Mutation SNP T T A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCAGACAGCCTCCAAGCTGCG 0.418 41 151 DSG1 1828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 28935112 28935112 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CACCAGCATGGGTGCTGGGAG 0.602 34 86 B3GNT3 10331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 17922692 17922692 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGACATCTTCCCCATTGATGA 0.622 19 172 ATP4A 495 hgsc.bcm.edu;broad.mit.edu 37 19 36046429 36046429 + Silent SNP G G C rs150964145 byFrequency TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCAGGGCCTCGACCAGTTCCG 0.657 4 70 PSG11 5680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 43519344 43519344 + Silent SNP A A G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CATAGAGCCCATTATGCTTTG 0.463 41 118 LILRA4 23547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 54849804 54849804 + Missense_Mutation SNP T T A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CTCCAGTGTTTTTAATATGTG 0.522 52 131 EPHA10 284656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 38227727 38227727 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGGACGGTCGTGTTCATCCAC 0.627 37 107 SRSF11 9295 hgsc.bcm.edu;broad.mit.edu 37 1 70712575 70712575 + Missense_Mutation SNP C C G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCCAGACGTTCTAGAAGTGCA 0.348 9 115 TDRD10 126668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 154516509 154516509 + Missense_Mutation SNP G G A rs143192137 byFrequency TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CATCCATAGCGTCCGTGGGGA 0.612 54 148 COLGALT2 23127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 183938503 183938503 + Silent SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGGCCTCCTTCCTGAGGTCAA 0.537 50 155 KIF26B 55083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 245862231 245862231 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TCTGGAACACCGCCAGCAGAG 0.567 21 57 OR11L1 391189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248004441 248004441 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GATCATGGTCCCGTAGTAGAG 0.498 34 98 PLCB1 23236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 8737747 8737747 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AACGACTCCAGCAGAAAATGG 0.478 26 103 ATP9A 10079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 50224091 50224091 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TCAAAACCCATATTAAGAATG 0.498 6 61 GAB4 128954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 17473039 17473039 + Missense_Mutation SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TGGCCCCTCCGCAGGATAAAC 0.493 68 120 C2orf40 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 106690448 106690448 + Silent SNP C C G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGACTCGGCCCGAGGTGCAGC 0.577 36 103 SCN7A 6332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 167288988 167288988 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TGTGCCACTGCTTTTTTCCTT 0.388 52 159 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170060647 170060647 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TTTGTTAGCTCGGTAAATTCT 0.443 119 211 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170115593 170115593 + Missense_Mutation SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb ACTACTGTGCGTCTCGTTTTA 0.398 35 157 MARS2 92935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 198570143 198570143 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CTGCGAACGTCCGTCCTCCGC 0.682 8 59 DCLK3 85443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 36779214 36779214 + Missense_Mutation SNP G G C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TCATCTCTGAGAGTCATCCTT 0.582 71 91 GNL3 26354 hgsc.bcm.edu;broad.mit.edu 37 3 52727062 52727062 + Splice_Site SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb ATGCTCGACAGGTAAAAGGAC 0.463 3 40 SLC7A14 57709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 170219060 170219060 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AATTCCCCAACAGTGACATAG 0.527 7 49 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178917478 178917478 + Splice_Site SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TTTATTAAAGGTTTTGCTATC 0.338 19 44 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 20597371 20597371 + Silent SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TCGATTTTGACGACTGCCAAG 0.468 91 105 DCHS2 54798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155254316 155254316 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GATGGAGTACCGGATGAGTCC 0.647 13 38 CCDC110 256309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 186380589 186380589 + Missense_Mutation SNP G G C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TTTGGTCGAGGAAGGACAGTG 0.308 30 120 EGFLAM 133584 hgsc.bcm.edu;broad.mit.edu 37 5 38464022 38464022 + Missense_Mutation SNP T T G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TGTCCACCGATTACCACATTT 0.517 3 64 PCDHA7 56141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140214298 140214298 + Silent SNP G G T rs61730625 TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGGTGATCGTGGAAAGGCCGC 0.557 215 403 NR3C1 2908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 142779650 142779650 + Missense_Mutation SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGGTTTAGTGTCCGGTAAAAT 0.413 8 118 SH3RF2 153769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 145393444 145393444 + Silent SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGTCCAGGAGGAAGGTGCCTG 0.577 19 99 TIGD6 81789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 149375645 149375645 + Silent SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TTTTGGCATGGATTTCTTGAA 0.453 117 154 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150943010 150943010 + Silent SNP A A G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TGCCCACGGGAGCATCCTCCT 0.542 10 113 FLNC 2318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128494111 128494111 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CCGCACGGAGCGCACGGAGAT 0.657 22 45 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 77617899 77617899 + Missense_Mutation SNP T T G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CTCGTCCTCCTCGGCGACTGT 0.428 11 24 MATN2 4147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 99019780 99019780 + Missense_Mutation SNP T T G TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CCTTTGCCTGTCAGTGTCCTG 0.557 38 82 SPATA31C1 441452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 90534221 90534221 + RNA SNP A A T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AACAGGGCGGAGGGGGAGGCC 0.572 47 142 TLR8 51311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 12938644 12938644 + Silent SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GTATTTTCTTCATTGGGCCAA 0.378 11 98 CXorf23 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 19955647 19955647 + Missense_Mutation SNP A A C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AATTCTGATCATCCCTAATAA 0.259 17 66 DGAT2L6 347516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69421805 69421805 + Missense_Mutation SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGGCAATGCCGTGGTTATTGT 0.512 15 107 SYTL4 94121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 99931048 99931048 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TTCTGCTTGGCCATTGAGGAA 0.552 6 22 HS6ST2 90161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 131762858 131762858 + Missense_Mutation SNP T T A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GACAGAGAGGTTGTAGCAGCC 0.522 35 158 POM121L12 285877 broad.mit.edu;ucsc.edu 37 7 53103578 53103578 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGGGCGCCCGGTGCCCAGCAC 0.711 13 54 HNF1B 6928 broad.mit.edu;ucsc.edu 37 17 36093613 36093613 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CCGATCGTAGGCCTGGTACAA 0.582 22 129 FAM47C 442444 broad.mit.edu;ucsc.edu 37 X 37027101 37027101 + Silent SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CCAAGACTCCGGTGTCCAGTC 0.652 25 69 SOGA3 387104 broad.mit.edu;ucsc.edu 37 6 127797356 127797356 + Missense_Mutation SNP G G C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CCAGTTCGACGATTTTCCTGC 0.607 16 182 CALCR 799 broad.mit.edu;ucsc.edu 37 7 93065307 93065307 + Missense_Mutation SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb ATATATCTTCCCAAGCATCTT 0.453 9 53 BAIAP2L1 55971 broad.mit.edu;ucsc.edu 37 7 97922907 97922907 + Splice_Site SNP C C T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GGGTTTTCTCCGCTGCAGGGG 0.527 25 100 ITGA2 3673 broad.mit.edu;ucsc.edu 37 5 52344295 52344295 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CAGCTTCTCACCTGCAACTCA 0.478 45 43 FAM83B 222584 broad.mit.edu;ucsc.edu 37 6 54806263 54806263 + Missense_Mutation SNP C C A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb TAGAAGAAAGCATTCTTCCTC 0.378 15 31 ZNF536 9745 broad.mit.edu;ucsc.edu 37 19 31040286 31040286 + Missense_Mutation SNP G G T TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb GCCGGAGCGGGGGCCCCAGAG 0.607 6 19 COL22A1 169044 broad.mit.edu;ucsc.edu 37 8 139793188 139793188 + Silent SNP G G A TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb CTTTGCTGCCGTCTCTCCCAG 0.527 24 43 SCN1A 6323 broad.mit.edu;ucsc.edu 37 2 166901577 166901577 + Silent SNP T T C TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGTACCTCTTTTCATATGTCA 0.428 27 57 SPATA31E1 286234 broad.mit.edu;hgsc.bcm.edu 37 9 90500087 90500087 + Frame_Shift_Del DEL C C - TCGA-DU-8165-01A-11D-2253-08 TCGA-DU-8165-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3470090e-ffbe-4874-ae9f-9b8b85494ed9 ac772409-6c5c-4b63-af6b-c77a4af6c6eb AGAGCCCTTGCTTCCCCTAAA 0.617 54 231