Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count POLR3A 11128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 79773462 79773462 + Missense_Mutation SNP G G T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GAAGATGAAGGTTCATTTCAT 0.478 49 86 FANK1 92565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 127668874 127668874 + Missense_Mutation SNP A A G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GAAGAAGAAGACCCCAAAATG 0.428 41 37 TALDO1 6888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 755990 755990 + Missense_Mutation SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GCCTATGGCCGGAAGCTGGGC 0.607 4 34 MUC2 4583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1101611 1101611 + Missense_Mutation SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GCTGGGATTCGAAGTGAAGAG 0.642 85 101 NLRP14 338323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 7081199 7081199 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AAGAGCCTGACGCATCTGGAT 0.453 16 180 PTPRJ 5795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 48149530 48149530 + Missense_Mutation SNP A A G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ACCTTCTACAACATCACAGTG 0.577 54 72 FAM90A1 55138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 8376782 8376782 + Silent SNP G G A rs77163560 TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TGGCCGTGTGGCCAAAGGCCT 0.537 46 58 TIMELESS 8914 hgsc.bcm.edu;broad.mit.edu 37 12 56827689 56827689 + Missense_Mutation SNP C C G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CCTCAAATAGCGGATCAGATC 0.542 19 175 ZBTB39 9880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57398076 57398076 + Missense_Mutation SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ATGGTCTTCTGTCTTTGGCGG 0.572 16 105 ARHGAP11A 9824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 32929682 32929682 + Missense_Mutation SNP A A G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CCTAAAGAACAGAAGTCCATG 0.398 47 66 AKAP13 11214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 86262400 86262400 + Missense_Mutation SNP A A C TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CTTTTTGAGCAGCAGATGGTA 0.483 24 40 MAPK8IP3 23162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 1797211 1797211 + Missense_Mutation SNP G G T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AAGCGTGCCCGGGAGAAGCGC 0.662 27 48 C16orf86 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67701892 67701892 + Silent SNP A A G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGCCCTCACCATCTGCCAAAC 0.607 8 37 DPEP2 64174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 68026419 68026419 + Silent SNP G G A rs151283462 TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GTACCTGGGCGCCCACGAGGC 0.567 58 83 LIG3 3980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 33328319 33328319 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TTCTCCAAATCGGAGGCTCAT 0.532 21 38 UNC45B 146862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 33495136 33495136 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CAGACAGTGTCAGGGATCCTG 0.547 48 84 SEC14L1 6397 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 75208130 75208130 + Silent SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CCAAGAGGTCGCCACAACCAC 0.527 157 249 SERPINB2 5055 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 61570518 61570518 + Silent SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TTTTATTTTTCGGCAGATTTT 0.388 40 61 KDM4B 23030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 5131427 5131427 + Silent SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGGCCTTTGAGCACTTTGCCC 0.657 19 47 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9058837 9058837 + Missense_Mutation SNP G G T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GAGAAGCCTGGGGAAGAGGAA 0.483 7 63 ZNF442 79973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12461542 12461542 + Missense_Mutation SNP G G T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TCCAGTGTGAGTTCTTTCATG 0.413 13 147 ZNF208 7757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 22155320 22155320 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AAAGGCTTTGCCACATTCTTT 0.373 31 22 OR2T4 127074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248525565 248525565 + Missense_Mutation SNP A A T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TCACTCTATGAGATTTTCATG 0.478 67 206 TAB1 10454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 39824142 39824142 + Missense_Mutation SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GGTCAACGGGGCTCACAGTGC 0.642 15 125 TANC1 85461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 160053205 160053205 + Silent SNP T T C TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ACCTGCTGACTTGTGAGTGGT 0.667 63 86 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ATAAGCATGACGACCTATGAT 0.393 52 65 D2HGDH 728294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 242707146 242707146 + Missense_Mutation SNP A A G rs149519095 by1000genomes TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CTGCACCTCAATGTGACGGCG 0.697 48 71 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52420205 52420205 + Silent SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGGAGACCCGGAATTCAGTGC 0.557 7 8 PLXND1 23129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 129290353 129290353 + Splice_Site SNP G G A rs146029556 TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ATGCCTCACCGTGGGCTCCCG 0.662 28 44 BFSP2 8419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 133191307 133191307 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CGAGCGGAGGCGGAGCAGCAG 0.667 20 34 PRR23B 389151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 138738764 138738764 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GAGCGGCGAGCGCGCGTGGGG 0.657 10 23 TENM3 55714 hgsc.bcm.edu;ucsc.edu 37 4 183594354 183594354 + Silent SNP A A G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GGAAAGGCTTACCGCCTTCCC 0.383 4 26 MLF1IP 79682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 185650178 185650178 + Silent SNP T T C TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GCTTGCACTTTTGACCAGCTT 0.373 7 56 THBS4 7060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 79335903 79335903 + Missense_Mutation SNP T T G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TTCCCAGTCTTTGACCTTCTC 0.493 65 88 NDST1 3340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 149927941 149927941 + Silent SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GTGCCTATCACGCCAACCAGG 0.627 19 39 GLRA1 2741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 151239373 151239373 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ATTCCCATTCCGGGAGATCCT 0.522 22 44 DSP 1832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 7583354 7583354 + Silent SNP C C A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ATCGAGAGACCCAGACTGAGT 0.522 33 36 MED23 9439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 131917229 131917229 + Silent SNP A A G TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGATGGGCAGATAGGGAGACT 0.423 21 185 HGF 3082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 81372731 81372731 + Missense_Mutation SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GCACCATGGCCTCGGCTGGCC 0.473 49 47 PREX2 80243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 69005869 69005869 + Missense_Mutation SNP C C A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TTTATAATAGCATTGAGAGTG 0.423 50 111 TMEM71 137835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 133764099 133764099 + Silent SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CATCTTTGTCGCACAGGAAGC 0.468 79 125 CSF2RA 1438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 1409322 1409322 + Missense_Mutation SNP G G A rs147180621 byFrequency TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TTAACGTCTCGCAATTACTTT 0.423 103 217 ATXN3L 92552 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 13337542 13337542 + Missense_Mutation SNP T T C TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGCTTCACAGTCTGGCAGATC 0.393 33 55 CASK 8573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 41393959 41393959 + Splice_Site SNP G G T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CATTGCTTACGTGGAATAGGG 0.338 45 65 CCNB3 85417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 50051784 50051784 + Silent SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GTGATGATGCGTTTGTTATAG 0.408 30 49 MAGEE1 57692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 75649858 75649858 + Missense_Mutation SNP T T C TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AAGTACCCTATCCGGGAGTCT 0.502 40 85 ZCCHC12 170261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 117959418 117959418 + Missense_Mutation SNP G G A TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 agtcaatggcgtcctgccaga 0.557 60 35 ANKRD20A5P 440482 broad.mit.edu;ucsc.edu 37 18 14179433 14179433 + RNA SNP G G C TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GGGCCAGACGGTCCTGGGCTC 0.602 5 18 TNRC6C 57690 broad.mit.edu;ucsc.edu 37 17 76094488 76094488 + Silent SNP G G T rs145461604 by1000genomes TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AAGCCTCTCTGTCTCATGAAC 0.557 18 18 ZMIZ2 83637 broad.mit.edu;ucsc.edu 37 7 44799776 44799776 + Silent SNP C C T TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ACGGGCAGGGCGCCAGCTTCA 0.687 8 62 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78433338 78433339 + Frame_Shift_Del DEL TG TG - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CGGTGGTAACTGTGTTCCAAAA 0.282 35 5 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52661373 52661376 + Frame_Shift_Del DEL TCTT TCTT - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CCTGGCAAGCTCTTTCTTCTTTGC 0.422 27 21 PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu 37 3 178916938 178916940 + In_Frame_Del DEL GAA GAA - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGGCAACCGTGAAGAAAAGATCC 0.34 39 56 WDFY3 23001 broad.mit.edu;hgsc.bcm.edu 37 4 85715705 85715708 + Frame_Shift_Del DEL CAAT CAAT - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TTGGTGGAAACAATCAGAGATCGG 0.358 49 157 SAP30 8819 broad.mit.edu;hgsc.bcm.edu 37 4 174292617 174292619 + In_Frame_Del DEL AGA AGA - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGCATCTCCCAGAAGAAGGTGAA 0.675 23 51 DMXL1 1657 broad.mit.edu;hgsc.bcm.edu 37 5 118479596 118479598 + In_Frame_Del DEL ATT ATT - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GCCAGGATGCATTATTGCATTAG 0.286 122 279 HSD17B4 3295 broad.mit.edu;hgsc.bcm.edu 37 5 118810104 118810106 + In_Frame_Del DEL GAA GAA - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGATTCAGTGGAAGAAGGAGAGA 0.419 79 120 HDAC2 3066 broad.mit.edu;hgsc.bcm.edu 37 6 114277817 114277818 + Frame_Shift_Del DEL AA AA - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GACAAAACTCAAAGAGTCCATC 0.361 16 86 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139412252 139412254 + In_Frame_Del DEL CGT CGT - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 AGGCAGGTGGCGTCGTTCTGGCA 0.665 25 131 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139413070 139413072 + In_Frame_Del DEL AGA AGA - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CACTCGCAGTAGAAGGAGGCCAC 0.655 10 19 TCERG1L 256536 broad.mit.edu;hgsc.bcm.edu 37 10 132944858 132944861 + Frame_Shift_Del DEL CAGA CAGA - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 GGGCTTCTCCCAGACAGACAGGTG 0.554 15 44 CREBZF 58487 broad.mit.edu;hgsc.bcm.edu 37 11 85375242 85375244 + In_Frame_Del DEL CTT CTT - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TCACGTACTCCTTCTTCTTCAGT 0.665 57 127 ITGB7 3695 broad.mit.edu;hgsc.bcm.edu 37 12 53586167 53586169 + In_Frame_Del DEL AAG AAG - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 ATCCTCCACCAAGAAGAAGAACA 0.567 42 125 CLPX 10845 broad.mit.edu;hgsc.bcm.edu 37 15 65443196 65443198 + In_Frame_Del DEL CTT CTT - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 CGGGGCCATCCTTCTTCTTCAAC 0.384 96 165 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42795593 42795594 + Frame_Shift_Del DEL TG TG - TCGA-DU-8168-01A-11D-2253-08 TCGA-DU-8168-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4a6fa4e0-950d-443a-9b46-1c06afd74a00 f43e15d0-53eb-4076-81f8-e5c44e43b9d9 TCCTGCAGTCTGTACCCTCCGC 0.624 49 12