Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PRF1 5551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 72358728 72358728 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CTCGTTGTCCGTGAGCCCTTC 0.637 35 36 BTRC 8945 hgsc.bcm.edu;broad.mit.edu 37 10 103281443 103281443 + Silent SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CCAAGCAACGGAAACTCTCAG 0.388 5 70 MS4A8 83661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 60476228 60476228 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TGCCTACCCCGACTATTATCC 0.463 18 98 P2RY2 5029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 72945337 72945337 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CGTGGTGTGCGTGCCTGGGCT 0.587 19 166 CEP164 22897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 117266823 117266823 + Missense_Mutation SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GAAGTGACAGTTGAGGAAAAT 0.552 57 200 ITPR2 3709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 26752943 26752943 + Missense_Mutation SNP G G C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AACAAATTCAGATGTTTATGA 0.328 11 40 MTUS2 23281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 29600162 29600162 + Missense_Mutation SNP A A G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TATTCCTAATAATCTGACTGA 0.473 19 57 TCF12 6938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 57543547 57543547 + Splice_Site SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GGTTTTAACAGGTACCAGTCA 0.423 21 30 SLTM 79811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 59186365 59186365 + Missense_Mutation SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TCTTTCTTCATTTCTTTCTTA 0.294 5 44 VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 62254029 62254029 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCAGCCCTTTCTGCAGCCTGG 0.448 18 80 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCACAAACACGCACCTCAAAG 0.542 35 9 CDK12 51755 hgsc.bcm.edu;broad.mit.edu 37 17 37627827 37627827 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCTTCCAGTACTTCAACTTTG 0.507 14 272 GH1 2688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 61995729 61995729 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GTGTCAAAGGCCAGCTGGTGC 0.582 68 281 GALR1 2587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 74980584 74980584 + Missense_Mutation SNP C C G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTTGGAATCTCCTGGCTGCCG 0.567 42 204 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1044692 1044692 + Silent SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCTGGCAGGACGCACACGCTG 0.667 11 46 PRR19 284338 hgsc.bcm.edu;broad.mit.edu 37 19 42813898 42813898 + Silent SNP G G T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ATCCACCTGTGGTCCCTACTG 0.622 9 138 ZNF613 79898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 52447902 52447902 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AAACCACACAGGAGAGAAACC 0.458 49 109 LRIG2 9860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 113637236 113637236 + Missense_Mutation SNP A A G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TGTTAAAGGGAACTTAAAAGA 0.303 23 76 PTGFRN 5738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 117504195 117504195 + Missense_Mutation SNP G G C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AATTATTACTGTGTTGTGTCT 0.453 33 67 WARS2 10352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 119683216 119683216 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTATGAAGTGCCCGGATGAAG 0.597 21 42 LRRN2 10446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 204587235 204587235 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AATGAGCCCAGGACGGTCCCC 0.627 6 33 PM20D1 148811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 205819185 205819185 + Missense_Mutation SNP C C A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGCACGCAAACGCACCGCTGA 0.602 13 48 USP25 29761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 17250117 17250117 + Silent SNP A A G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCATTAAGAAATTAAATGAGC 0.313 6 9 TEF 7008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 41783620 41783620 + Silent SNP A A G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CAGCATCCCCACCATCCTCCT 0.612 26 45 CNGA3 1261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 99006190 99006190 + Silent SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCTGGCTGACCGCCATCGCCC 0.557 16 121 IL1B 3553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 113591147 113591147 + Silent SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GGTCCTGGAAGGAGCACTGCG 0.597 25 82 DPP10 57628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 116538514 116538514 + Missense_Mutation SNP A A G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGAACAATGTACATATTTTGA 0.284 32 64 CCDC93 54520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 118731539 118731539 + Missense_Mutation SNP A A G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GAGTCCCACAATCTGGCCCAC 0.537 18 11 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152376199 152376199 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TAGCATCTTTCATGACTTTGT 0.323 13 140 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ATAAGCATGACGACCTATGAT 0.393 27 72 TMCC1 23023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 129389499 129389499 + Silent SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CCACTTGCCCTTCCTCTAAAG 0.478 11 107 RNF168 165918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 196229803 196229803 + Missense_Mutation SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ATAGTGTTTTTGAATTATCGT 0.512 32 58 PDHA2 5161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 96762461 96762461 + Missense_Mutation SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTTAAGTCCGTCAGTTAAAGG 0.398 47 70 EGF 1950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 110895897 110895897 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AATGGGAAACGTTCCAAAATA 0.353 17 40 TNXB 7148 hgsc.bcm.edu;ucsc.edu 37 6 32038129 32038129 + Missense_Mutation SNP G G C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TCTGGGGTGGGGTCTGTCACC 0.602 5 43 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 4026875 4026875 + Silent SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CCCACAGCCACGCCGTGGTGC 0.458 21 177 CDHR3 222256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 105669001 105669001 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CTGCAGAAACGAAGACTGCAG 0.537 24 37 ZC3HAV1L 92092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 138711561 138711561 + Missense_Mutation SNP G G C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TGAATGCTCAGTCGAAGGTGA 0.517 9 56 DLC1 10395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 12946019 12946019 + Silent SNP A A C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGTCTCGAGCAGGATGAGGTG 0.423 19 100 MTUS1 57509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 17581236 17581236 + Silent SNP T T G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGGGGGTGCTTCCTGTCCTCC 0.483 14 120 PSD3 23362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 18393458 18393458 + Missense_Mutation SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ATACATTTCATAGCGGGTTTT 0.483 13 97 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 35406823 35406823 + Silent SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CTGACAATGGCGAAGCCCTTC 0.468 27 55 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747027 94747027 + Missense_Mutation SNP C C G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTGAAGTTATCCAGTTGCCTC 0.493 20 132 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747336 94747336 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CCTTTGTCATCATAAAGCAAG 0.373 32 173 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747712 94747712 + Silent SNP C C G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GTTCATCAGTCAGATCAGTAC 0.343 12 70 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747854 94747854 + Missense_Mutation SNP C C G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TCGAAAATGTCTATCATTAAT 0.398 12 112 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747893 94747893 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTCTTCAGATCTCCTAAGAAC 0.398 13 145 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747940 94747940 + Missense_Mutation SNP C C A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CAAACTCAATCCACTGTTGTT 0.373 23 149 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94747956 94747956 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTGTTCTGATCCTTGCATTAC 0.383 23 158 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94748053 94748053 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ACTATGGCATCACCATTATTT 0.363 19 159 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94748131 94748131 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ACACGTACATCATCTTCATTT 0.393 11 76 UNC13B 10497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35366984 35366984 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CAGTGGCTCCCGGAAGGGTAA 0.448 44 57 ROR2 4920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 94495542 94495542 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ATGGTGTACTCCTGGCGGCAC 0.672 9 29 RGS3 5998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 116358026 116358026 + Missense_Mutation SNP C C T rs144334750 TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GAATACATCGCGATCCAGGCA 0.567 29 56 TRIM32 22954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 119461244 119461244 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AAGGAAATCCGCCGCAGCCCC 0.517 86 103 ANAPC2 29882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140079392 140079392 + Missense_Mutation SNP T T C TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGCTCCTCGATGCGCAGGCTG 0.701 7 54 GDPD2 54857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69652495 69652495 + Missense_Mutation SNP A A T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCTTTTGTGGACCTTCCTCCT 0.488 32 180 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76939496 76939496 + Nonsense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TCCATCGCTCGAAACTCGGAA 0.373 188 184 TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 123785888 123785888 + Silent SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 TTAAGATCAGGTTCCGAGGGG 0.433 8 59 PCDHGB4 8641 broad.mit.edu;ucsc.edu 37 5 140769361 140769361 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GACGCCGTCCGCCAGCGCCTT 0.692 19 48 SIGLEC16 400709 broad.mit.edu;ucsc.edu 37 19 50475156 50475156 + RNA SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCCAAAGCCTGCGTCTGGTCT 0.662 5 35 OR5H2 79310 broad.mit.edu;ucsc.edu 37 3 98002530 98002530 + Missense_Mutation SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GTATTTGCGCCCTGCATCTCC 0.398 12 86 RGMA 56963 broad.mit.edu;ucsc.edu 37 15 93595609 93595609 + Missense_Mutation SNP G G A TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GCCGTCCGCCGCGTGCACAGG 0.677 4 29 TMEM131 23505 broad.mit.edu;ucsc.edu 37 2 98388789 98388789 + Silent SNP C C T TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GGATTTCTTTCTTAATATTTA 0.363 5 153 RBM12B 389677 broad.mit.edu;ucsc.edu 37 8 94747221 94747221 + Missense_Mutation SNP C C G TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGATATAAGTCTTAATAACAC 0.423 35 225 OR13G1 441933 broad.mit.edu;ucsc.edu 37 1 247835572 247835572 + Missense_Mutation SNP G G T rs117404602 by1000genomes TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 GAAGCAGGGCGGATATAGGTG 0.463 44 51 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52595944 52595944 + Frame_Shift_Del DEL C C - TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 CCGTTTGGAGCCTTCCTTCTT 0.463 82 100 RASA1 5921 broad.mit.edu;hgsc.bcm.edu 37 5 86627234 86627238 + Frame_Shift_Del DEL TTATC TTATC - TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 AGTCTGGCAGTTATCTTATAAGAGA 0.415 14 69 DENND4C 55667 broad.mit.edu;hgsc.bcm.edu 37 9 19360274 19360274 + Frame_Shift_Del DEL T T - TCGA-E1-5307-01A-01D-1893-08 TCGA-E1-5307-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4b93592-7b90-4aab-9a5b-497b9d865c78 b9089424-6298-495f-afc9-604a38eddf01 ATCCTCCCCCTGTTTCTGTGC 0.353 28 113