Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count KNDC1 85442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 135038195 135038195 + Missense_Mutation SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CAGGTGCACGCGTTCCAGGAG 0.597 25 59 OR52B6 340980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5602864 5602864 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CAAGATGCCCGCTCCAAGGCC 0.507 43 340 MS4A6E 245802 hgsc.bcm.edu;broad.mit.edu 37 11 60105367 60105367 + Missense_Mutation SNP G G T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TCTTTCTTATGATTATCATTC 0.403 14 199 AHNAK 79026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 62299210 62299210 + Silent SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CTTCTGGGCCCTCTGCTTTGA 0.517 280 348 CWF19L2 143884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 107224323 107224323 + Missense_Mutation SNP T T C TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TTTTTCCATTTGTGCAGCAAG 0.393 50 79 KSR2 283455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 118016978 118016978 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GACTGTGCACGTCTGAGACAT 0.468 7 52 LMO7 4008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 76382215 76382215 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TGGAAACTGGGAACTACCGTG 0.498 26 59 CYP1A1 1543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 75012968 75012968 + Silent SNP G G C TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GGAAGAGAAAGACCTCCCAGC 0.542 35 141 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631838 90631838 + Missense_Mutation SNP C C A rs121913503 TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ATGGGCGTGCCTGCCAATGGT 0.632 65 88 CDH5 1003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66436644 66436644 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CGAGCAGCTGGTCACCTACGA 0.711 5 17 KRT33B 3884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39521763 39521763 + Missense_Mutation SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TCCACCTCCACGTTGAGGCGG 0.522 27 40 ELL 8178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18557617 18557617 + Silent SNP G G A rs73923115 byFrequency TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TGCAGGTTCCGTTTAAACCTA 0.572 13 55 PRODH2 58510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36302867 36302867 + Silent SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TCCTTACCTGCCCAGAGTCCA 0.597 24 14 KLK4 9622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51411835 51411835 + Splice_Site SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GTGAGCTCACCGTTCGCCAGC 0.637 8 85 HRNR 388697 hgsc.bcm.edu;broad.mit.edu 37 1 152193228 152193228 + Missense_Mutation SNP A A G TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TGGCCCAAAGACTGACGGGAA 0.607 15 317 SELE 6401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 169698637 169698637 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ACCTTTACACGTTGGCTTCTC 0.443 87 103 IL1RL2 8808 hgsc.bcm.edu;broad.mit.edu 37 2 102805614 102805614 + Missense_Mutation SNP C C A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ACATTCCCTCCCATAACATCT 0.378 10 151 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152521900 152521900 + Missense_Mutation SNP T T A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ATTGTGTCCATGGCGTAAGTG 0.507 33 41 KLHL30 377007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 239051515 239051515 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GGAGGAGGAGGCAGGTGAGGA 0.672 6 18 SI 6476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 164776970 164776970 + Missense_Mutation SNP A A G rs148511215 by1000genomes TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ATGATGACATATTTCTGTCCA 0.323 16 102 FSTL5 56884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 162577528 162577528 + Nonsense_Mutation SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TGTTCCTTTTCCAGATAATGG 0.353 18 106 PSD3 23362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 18725224 18725224 + Missense_Mutation SNP T T C rs62636654 TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TTCGTGTAGATGGAGTCGCTG 0.507 73 111 KCNU1 157855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 36671795 36671795 + Missense_Mutation SNP A A G TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GAGTCAATTTACCTGGTCATG 0.433 8 63 KLHL9 55958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 21333865 21333865 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GCATCCATTGGGGCTAAAGAT 0.418 91 145 SIT1 27240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35650242 35650242 + Splice_Site SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 AGACAGCCGTCCTGGGACGGG 0.627 55 78 ARSE 415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 2867631 2867631 + Missense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 AGGTTGACACGCTTCTCTGAG 0.527 9 77 MAGEB2 4113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 30237371 30237371 + Missense_Mutation SNP A A T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GAGATCTGGGAATTCCTGAAT 0.483 14 63 PGRMC1 10857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 118370561 118370561 + Missense_Mutation SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CGCCGAGCTGCGGCGCTTCGA 0.711 16 31 LAMP2 3920 hgsc.bcm.edu;broad.mit.edu 37 X 119581704 119581704 + Nonsense_Mutation SNP G G A TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ACCTTATCCTGAGTGATGTTC 0.403 19 258 NAIP 4671 broad.mit.edu;ucsc.edu 37 5 70308387 70308387 + Missense_Mutation SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 TGGATGAAACCTCTTGTGGTC 0.473 65 98 RP11-377D9.3 0 broad.mit.edu;ucsc.edu 37 12 13155006 13155006 + RNA SNP G G C TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CGTACCCTATGAGGCAGAAGG 0.483 4 15 PDHA1 5160 broad.mit.edu;ucsc.edu 37 X 19368118 19368118 + Missense_Mutation SNP G G C TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 CAGGGAGGATGGGCTCAAATA 0.453 75 98 BRWD1 54014 broad.mit.edu;ucsc.edu 37 21 40590181 40590181 + Missense_Mutation SNP C C T rs75547980 TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 ACAGGGCCTGCAAAAGCTGCT 0.368 23 145 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42795241 42795242 + Frame_Shift_Ins INS - - GCCCCCT TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GGGGCCCCTGCGCCCCCTGCTG 0.698 10 30 BCOR 54880 broad.mit.edu;hgsc.bcm.edu 37 X 39933875 39933875 + Frame_Shift_Del DEL C C - TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 AGAAAGCGCTCCCCATTGGTG 0.577 42 66 NOTCH1 4851 ucsc.edu 37 9 139418186 139418186 + Missense_Mutation SNP C C T TCGA-E1-5318-01A-01D-1468-08 TCGA-E1-5318-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8c46a1df-1c10-4188-992a-a55b782494c9 0fce50b4-028d-4b54-aa49-3a8e28a7f7c6 GCCGGGCGGGCAGCGGCACTT 0.697 2 16