Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 73453969 73453969 + Missense_Mutation SNP G G A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CATCGTTCGCGCAGTGGACGG 0.627 11 47 RELT 84957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 73102213 73102213 + Silent SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GGGGGGTTCCCCGCGTTCCAT 0.587 68 110 SYTL2 54843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 85420400 85420400 + Silent SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea TTTTTACATCCGCTGCTGCTA 0.398 49 141 CD3D 915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 118211223 118211223 + Silent SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GTGTTCCCACCGTTCCCTCTA 0.458 20 51 C11orf63 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 122774732 122774732 + Silent SNP G G A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea AAGCGTTGCCGGAGTCCACGG 0.532 63 120 LRIG3 121227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 59272814 59272814 + Silent SNP A A C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GCCCCACAGCAGCACACTCCA 0.587 13 40 COQ5 84274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 120966932 120966932 + Missense_Mutation SNP C C A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GCACAGCTCCCGGGGGCCGCC 0.652 15 33 ABCC12 94160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 48162529 48162529 + Silent SNP G G A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ATTTCTTTGGGGTACTTTTCC 0.507 33 66 MMP15 4324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 58072238 58072238 + Missense_Mutation SNP G G A rs147283654 TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea AACCTGCGGCGGCGTCGGAAG 0.647 57 158 PSKH1 5681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67961376 67961376 + Missense_Mutation SNP G G A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea AACCTGCACCGCTCCATATCC 0.607 50 91 SLC44A5 204962 hgsc.bcm.edu;ucsc.edu 37 1 75716928 75716928 + Silent SNP G G A rs114123196 byFrequency TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea TTAGCAACACGGAGGGACTGG 0.413 31 73 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78432577 78432577 + Missense_Mutation SNP T T C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CCAGGAGCTATCTGTATTTTG 0.318 21 26 MARK1 4139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 220791711 220791711 + Silent SNP T T C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea TTGGTTTTAGTAATGAATTTA 0.383 25 66 SSTR3 6753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37603800 37603800 + Missense_Mutation SNP G G T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GCATTCTCAGGTTCTGAGGTC 0.632 22 53 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ATAAGCATGACGACCTATGAT 0.393 32 56 MYH15 22989 hgsc.bcm.edu;broad.mit.edu 37 3 108172944 108172944 + Missense_Mutation SNP C C G TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea AGTCTCTCATCTCTTATTGCT 0.393 5 55 YTHDC1 91746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 69179953 69179953 + Missense_Mutation SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ctctcgttcccggtctctttc 0.493 15 22 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 167674845 167674845 + Missense_Mutation SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea TGTCCAGTACCGCTATGATGG 0.567 38 118 BTNL3 10917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 180420089 180420089 + Missense_Mutation SNP T T A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CCCTCGGACATCGGCCTGTAT 0.522 13 2 SYNGAP1 8831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33405883 33405883 + Missense_Mutation SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CCCGGCTGTGCGGCTGAAAGC 0.592 24 186 MNF1 84300 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33665498 33665498 + Missense_Mutation SNP T T C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CACATGCCTTTATCTATTTCC 0.478 28 63 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 152831491 152831491 + Missense_Mutation SNP T T C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GGCAGGTTGCTGGTCAACTCT 0.448 35 45 CLN8 2055 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 1728624 1728624 + Missense_Mutation SNP A A C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea TATTGGACCCATAAGAAGACT 0.542 32 181 MLLT3 4300 hgsc.bcm.edu;ucsc.edu 37 9 20360828 20360828 + Missense_Mutation SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GCTGCCATCACTTAAGCTAAC 0.418 11 48 OR1L3 26735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 125437655 125437655 + Missense_Mutation SNP G G A rs142972365 TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea AAAGATGCTCGTGAACTTCTT 0.398 61 163 COL4A5 1287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 107816843 107816843 + Missense_Mutation SNP C C T TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ACTGCCAGGACCAAAGGGTAA 0.363 54 157 MAGIX 79917 broad.mit.edu;ucsc.edu 37 X 49022446 49022446 + Missense_Mutation SNP G G A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CCAGATCCTGGAGGGCCGGAG 0.617 31 78 HSP90AB2P 391634 broad.mit.edu;ucsc.edu 37 4 13339453 13339453 + RNA SNP G G A rs16898654 by1000genomes TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GATGCCACCCGTCTGAGCTGC 0.428 9 15 SLC22A8 9376 broad.mit.edu;ucsc.edu 37 11 62763251 62763251 + Missense_Mutation SNP T T C TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GTACTTGGCCTTGGCCAAGGA 0.597 80 169 SI 6476 broad.mit.edu;ucsc.edu 37 3 164767582 164767582 + Missense_Mutation SNP G G A TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ATTTTACCAGGAGTAAACGGT 0.264 17 58 SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu 37 6 158504625 158504627 + In_Frame_Del DEL AGA AGA - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ACTATGAGTCAGAAGGTTAGTGA 0.517 33 142 KMT2C 58508 broad.mit.edu;hgsc.bcm.edu 37 7 151845685 151845686 + Frame_Shift_Del DEL GA GA - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea GCACCAGCCTGAGTCTCATAGA 0.515 37 177 UCK1 83549 broad.mit.edu;hgsc.bcm.edu 37 9 134404915 134404915 + Frame_Shift_Del DEL T T - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea ACCTCCACCGTTTTGCCCTCC 0.557 47 115 LRRC43 254050 broad.mit.edu;hgsc.bcm.edu 37 12 122677545 122677545 + Frame_Shift_Del DEL C C - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CTCTGCCCGTCCCCAGGGTAA 0.577 10 35 HTR2A 3356 broad.mit.edu;hgsc.bcm.edu 37 13 47409749 47409750 + Frame_Shift_Del DEL AA AA - rs143289722 TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CCTGTAGCCCAAAGACTGGTAT 0.396 22 86 TYK2 7297 broad.mit.edu;hgsc.bcm.edu 37 19 10479066 10479067 + Frame_Shift_Del DEL AA AA - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CGAAGAGGGCAAAGAGATTGAA 0.54 48 110 LGALS13 29124 broad.mit.edu;hgsc.bcm.edu 37 19 40097866 40097868 + In_Frame_Del DEL AAG AAG - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea CTTGTAGATAAAGGTCAATGGCA 0.458 31 40 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42796905 42796906 + Frame_Shift_Del DEL TG TG - TCGA-E1-5319-01A-01D-1893-08 TCGA-E1-5319-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d252a54e-0377-4b3e-8228-26108ea704fa 1121c5c3-e239-4edf-aa09-af5dbfabaaea TGGTCTACACTGTGGCCACCAG 0.668 26 73