Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 43609023 43609023 + Silent SNP A A G TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TTGTTGGGGGACACGAGCCTG 0.642 8 21 ABTB2 25841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 34176285 34176285 + Missense_Mutation SNP G G A TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CATGGATTCTGTTCCTCCGTA 0.592 108 139 CTTN 2017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 70261803 70261803 + Missense_Mutation SNP A A G TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GGGAAGACTGAGAAGCATGCC 0.532 212 362 CWF19L2 143884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 107299708 107299708 + Missense_Mutation SNP G G T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 ACTCCATGATGTTAATCTTTC 0.418 42 527 LRIG3 121227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 59271321 59271321 + Silent SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CATCGTCTAACGATGGGGCTG 0.562 52 81 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24826581 24826581 + Missense_Mutation SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TGGCTGGCCACGTGCCAAATC 0.448 71 112 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578442 7578442 + Missense_Mutation SNP T T C rs148924904 TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TGACTGCTTGTAGATGGCCAT 0.622 139 20 NEK8 284086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 27065006 27065006 + Silent SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CTGGGCGTCTCATCCTGTGGG 0.701 45 57 SESN2 83667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 28598956 28598956 + Silent SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GGCCATGGCTCATCACCAAGG 0.652 63 100 HRNR 388697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152192510 152192510 + Missense_Mutation SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 AGACCCATGTCGGCTGTGTCC 0.567 45 414 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 ATAAGCATGACGACCTATGAT 0.393 54 118 DAW1 164781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 228750104 228750104 + Missense_Mutation SNP G G C TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GAGAATTAAAGACTAAGTCCA 0.343 19 258 OR5H6 79295 hgsc.bcm.edu;broad.mit.edu 37 3 97983515 97983515 + Silent SNP T T C TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CAGAATGTTTTCTCTTGGCAA 0.368 26 290 PDE6B 5158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 659049 659049 + Silent SNP A A G TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TCCAGGTCGCACTTCTCGTGG 0.627 21 56 FOXP4 116113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 41554783 41554783 + Missense_Mutation SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CCAGCAGCAGCTCCTGCAAAT 0.662 9 71 LAMA2 3908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 129475728 129475728 + Missense_Mutation SNP G G A TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TTGAATATACGTGGAAAGTAC 0.388 83 111 MACC1 346389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 20198861 20198861 + Missense_Mutation SNP A A G TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TTGGGTCCATAAATTCCAATT 0.398 66 95 SH2D3C 10044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 130507277 130507277 + Missense_Mutation SNP C C T TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GTCTTTGGGGCACTTCCGGGA 0.662 24 189 MAP7D3 79649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 135323365 135323365 + Missense_Mutation SNP T T A TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CCCATGACCATCTTTTTTGCT 0.323 91 137 FLOT1 10211 broad.mit.edu;ucsc.edu 37 6 30708275 30708275 + Missense_Mutation SNP G G A rs139987312 byFrequency TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 TCTCTCACCCGGATCCCAGCA 0.532 106 143 WNT9B 7484 broad.mit.edu;ucsc.edu 37 17 44953783 44953783 + Missense_Mutation SNP G G A rs149931425 by1000genomes TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GCCTTGGGCCGCCTAGAGCTG 0.642 54 89 LIMCH1 22998 broad.mit.edu;ucsc.edu 37 4 41646515 41646515 + Splice_Site SNP A A C TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CTCCACACTCAGGAGCACCAG 0.672 10 9 C3P1 388503 broad.mit.edu;ucsc.edu 37 19 10165979 10165979 + RNA SNP G G A TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 CACCTCCAAGGGGAACCCAGG 0.592 16 116 OR2T1 26696 broad.mit.edu;hgsc.bcm.edu 37 1 248570073 248570073 + Frame_Shift_Del DEL C C - TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GCTGCTGATTCCTTTCTCTGT 0.507 36 164 FAM208B 54906 broad.mit.edu;hgsc.bcm.edu 37 10 5784139 5784140 + Frame_Shift_Del DEL AA AA - TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 GTTTTACAGCAATCAGAACAAA 0.396 70 217 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76944356 76944356 + Frame_Shift_Del DEL T T - TCGA-E1-5322-01A-01D-1468-08 TCGA-E1-5322-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 52b650cf-fb99-462b-81a2-ce202f5c2eca 9b8501d7-1ba6-42ee-975c-dd1830d5a3a6 AAATGGAATCTTTTTGAAAAT 0.353 157 231