Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ACBD5 91452 hgsc.bcm.edu;ucsc.edu 37 10 27524038 27524038 + Silent SNP A A C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ATCTTCCAATAGGATCCCAAA 0.313 7 62 WDR11 55717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 122664218 122664218 + Missense_Mutation SNP G G C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TTATTACTGTGATTCACTGAA 0.418 10 123 OR51G1 79324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4944710 4944710 + Missense_Mutation SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GTTCATAAGGGGTGGTACCAG 0.453 26 86 MS4A1 931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 60230557 60230557 + Missense_Mutation SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GCACCCATCTGTGTGACTGTG 0.502 27 192 ANO2 57101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 5687543 5687543 + Missense_Mutation SNP G G T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GATATCTTTGGTTCTTACAGC 0.552 22 104 FGD4 121512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 32791723 32791723 + Silent SNP C C G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TGTATGGTGCCCCCCAGGTAT 0.502 17 78 PIBF1 10464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 73505357 73505357 + Silent SNP A A G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CGCTGATTTTAAAAGATCTGG 0.318 16 73 ADAM20 8748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 70991445 70991445 + Silent SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GAGTGACCCTGATGTGCACCA 0.522 50 82 HS3ST4 9951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 26147050 26147050 + Silent SNP T T A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TCAAACTGATTGTGGTGGTGA 0.502 38 186 MYBBP1A 10514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4445912 4445912 + Splice_Site SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 AACACTCACCGGGTGCCGGGA 0.637 18 93 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GCACAAACACGCACCTCAAAG 0.542 22 9 KANK2 25959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11304446 11304446 + Missense_Mutation SNP C C T rs147297854 TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 AAGCCACGGCCGCAGTAGGAA 0.667 38 105 EMR3 84658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 14749062 14749062 + Missense_Mutation SNP T T C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TTCCGTGCAGTGAGGAAGAGG 0.572 36 64 CACNG7 59284 hgsc.bcm.edu;broad.mit.edu 37 19 54445512 54445512 + Missense_Mutation SNP C C T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CATCAAGTACCCGGACCACCT 0.682 9 187 EYA3 2140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 28339787 28339787 + Missense_Mutation SNP T T C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TGACCAAGAATAGTATAGGTG 0.453 18 124 SHC1 6464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 154942867 154942867 + Missense_Mutation SNP G G C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 AGAGGAGGCAGGATGGGCCCC 0.662 21 34 APCS 325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 159557756 159557756 + Silent SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CCAGCCTCCTGGAAGCCTTTG 0.473 17 113 MED15 51586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 20939211 20939211 + Missense_Mutation SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CCTGGATGCCGTCCTGGCCAA 0.632 59 108 EPCAM 4072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 47613720 47613720 + Missense_Mutation SNP A A G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GATAAAGGAGATGGGTGAGAT 0.279 18 102 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ATAAGCATGACGACCTATGAT 0.393 24 73 CPS1 1373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 211525381 211525381 + Splice_Site SNP T T A rs113036168 TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GCAATTAAGGTAACATTTTCA 0.318 38 61 CACNA2D2 9254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 50417431 50417431 + Silent SNP C C T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CTTTGGGTGACGAGGCCCCCT 0.567 35 52 TRH 7200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 129695936 129695936 + Silent SNP C C T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CCCAGGGAGCCTATGGTCAAG 0.652 11 54 MTO1 25821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 74183326 74183326 + Silent SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 AGCATATACCGGACAATCCAT 0.423 30 54 BVES 11149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 105573323 105573323 + Missense_Mutation SNP T T C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CTCTGCAGCATAAGTTTGGCC 0.413 47 240 QKI 9444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 163984476 163984476 + Missense_Mutation SNP C C G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TCTCTTGCAGCAACAGCCCAG 0.507 8 50 RP1L1 94137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 10465064 10465064 + Missense_Mutation SNP C C T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GCCTCTGGGGCCTCTACACCT 0.612 70 422 LPL 4023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 19811731 19811731 + Missense_Mutation SNP A A C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CATTCACCAGAGGGTCCCCTG 0.488 28 157 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 100454689 100454689 + Missense_Mutation SNP A A G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CCCAAGTACAATTGTATCTGG 0.388 12 101 OSTF1 26578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 77752522 77752522 + Silent SNP T T G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TCCAGTTGCTTCTGGCAAAAG 0.388 27 42 BEND2 139105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 18189326 18189326 + Splice_Site SNP T T A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CAAAATAGCCTAGAAGCAAAA 0.358 17 67 GPKOW 27238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48972594 48972594 + Missense_Mutation SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 AGGTGTTTCCGCTTCCTCTCT 0.572 22 102 DGAT2L6 347516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69424364 69424364 + Missense_Mutation SNP T T A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ATTACCACTGTTGGTGAGCTT 0.502 19 109 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76889172 76889172 + Nonsense_Mutation SNP A A T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TTTGTCACACAAAAGAACTGT 0.328 14 39 GPR174 84636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 78427488 78427488 + Missense_Mutation SNP G G C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 CTTCCACCATGACACCTGAAT 0.413 11 97 RPS6KA6 27330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 83403057 83403057 + Silent SNP A A G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TACCTTTTAAAGAGGCTTTTT 0.303 16 29 XIAP 331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 123020096 123020096 + Missense_Mutation SNP G G C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ACAGGTATTGGTGACCAAGTG 0.458 14 122 LTBR 4055 broad.mit.edu;ucsc.edu 37 12 6494301 6494301 + Missense_Mutation SNP C C T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GCTGTGCCGCCCCTGTGACCC 0.637 35 295 OTX2 5015 broad.mit.edu;ucsc.edu 37 14 57270920 57270920 + Missense_Mutation SNP C C T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ACCCTCGACTCGGGCAAGTTG 0.572 7 47 HDAC6 10013 broad.mit.edu;ucsc.edu 37 X 48682404 48682404 + Missense_Mutation SNP G G T TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ACCTGCAGCAGGCCTAGACGT 0.542 30 67 OBSCN 84033 broad.mit.edu;ucsc.edu 37 1 228504445 228504445 + Missense_Mutation SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TCTGAAAAACGCGGCGGTCCG 0.672 6 30 CAMTA1 23261 broad.mit.edu;ucsc.edu 37 1 7723708 7723708 + Missense_Mutation SNP C C G TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GCGGGCTCAACAGCGACCCGG 0.647 35 78 PDIA6 10130 broad.mit.edu;ucsc.edu 37 2 10928839 10928839 + Missense_Mutation SNP T T C TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 ATTTTCTTTTTGTATTTGTCT 0.383 91 415 THSD7B 80731 broad.mit.edu;ucsc.edu 37 2 138425373 138425373 + Missense_Mutation SNP G G A TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 GGTTTATGGCGTTTCAGGTGG 0.343 7 33 PPP1R10 5514 broad.mit.edu;hgsc.bcm.edu 37 6 30576891 30576891 + Frame_Shift_Del DEL T T - TCGA-FG-5965-01B-11D-1893-08 TCGA-FG-5965-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0730868d-1fe9-4964-a0cc-a12a74d161e6 6f6eeb7c-c029-419f-a597-d0f72fd8ae69 TGCAGGAGAATGTTCAAGTAA 0.468 41 85