Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NRAP 4892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 115401191 115401191 + Missense_Mutation SNP C C T rs138124439 TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCCTTCATAGCGGCCTCTCAT 0.438 29 116 PRSS23 11098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 86519582 86519582 + Missense_Mutation SNP C C A rs150416218 TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ACGTCAAAGACGAGACCTATG 0.557 17 133 ADAMTS15 170689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 130341228 130341228 + Silent SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGGTGTGTGGGGGAGACAATA 0.572 14 73 PIP4K2C 79837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57989740 57989740 + Missense_Mutation SNP C C T rs144510690 TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTCCTACGATCGGACTCTGGT 0.522 26 117 CENPJ 55835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 25479612 25479612 + Missense_Mutation SNP C C G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCTGCTCCTCCTGGACTTGCT 0.428 11 71 CLEC14A 161198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 38724284 38724284 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGTTCTCTGCGGCACGGGGCT 0.617 24 150 RTN1 6252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 60212786 60212786 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AAGTCCAAGTCTTTATCTTCC 0.448 44 244 ZNF770 54989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 35274299 35274299 + Nonsense_Mutation SNP G G C TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TTCCTCACCTGATGAACCACA 0.343 13 77 DUOX2 50506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45389890 45389890 + Silent SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGTGGGAGGCGAAGACATACA 0.617 28 94 SLC28A1 9154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85467219 85467219 + Missense_Mutation SNP G G A rs150926643 TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TTTGCAGACCGAGGCTCCATT 0.567 9 61 MCTP2 55784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 94943169 94943169 + Missense_Mutation SNP C C G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGTATTAGGACTTTTACTCCC 0.448 22 146 SNX29 92017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 12571690 12571690 + Missense_Mutation SNP C C G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTACAACTTCCCACCCAAAAA 0.438 6 38 ADCY7 113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 50347883 50347883 + Silent SNP C C G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TACTGAAGCCCAAGTTCAGCG 0.617 14 81 IRX6 79190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 55361633 55361633 + Silent SNP C C G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCATGCTGGCCATCATCACCA 0.572 22 116 ZNF276 92822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89804475 89804475 + Missense_Mutation SNP T T A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGACTTTGCCTGTGACCAGTG 0.597 11 47 USP6 9098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 5072170 5072170 + Nonsense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TTTGGTACCACGAGACCCGGC 0.473 48 244 CUEDC1 404093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 55946527 55946527 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGCATCTTCAGACACAGCGGG 0.617 7 34 MYOC 4653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 171605340 171605340 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CAGGTTTGTTCGAGTTCCAGA 0.527 37 150 SNRPE 6635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 203832798 203832798 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CAGAGATCGCGGATTCAGGTG 0.473 630 142 TSHZ2 128553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 51872726 51872726 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTTAGGAAAACGGGCGGGACA 0.488 9 69 SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 45616592 45616592 + Nonsense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GTTACATTTCGTATGGGAATC 0.433 15 74 PPP3R1 5534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 68413615 68413615 + Silent SNP A A G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGAATTCTTCAAAGGATATTC 0.333 17 114 CHST10 9486 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 101009737 101009737 + Silent SNP C C A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GTTTCTGGTACCCAAAGAGCT 0.448 19 123 IL1A 3552 hgsc.bcm.edu;ucsc.edu 37 2 113537124 113537124 + Missense_Mutation SNP C C A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGATCATTGGCTCGAATTATA 0.413 6 58 MYO7B 4648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 128341815 128341815 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGACTATATCCACTACACCGA 0.577 15 92 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179396156 179396156 + Silent SNP A A G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ATGAAACAGCATACGCCTCTG 0.473 34 129 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179585342 179585342 + Missense_Mutation SNP C C A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CACATCAGAACCTTTAAGAGC 0.393 7 35 PTH2R 5746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209309554 209309554 + Silent SNP C C A rs143390240 TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ATAATCTCATCTTTGTGGCTT 0.413 46 217 SCN10A 6336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 38755451 38755451 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGACTTACCCGCATGCCTTCA 0.552 26 107 SETD2 29072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 47098400 47098400 + Nonsense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ATGGTTGCTTGAGACTGTGCA 0.463 14 92 ERC2 26059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 56026258 56026258 + Silent SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCATCCTGGAGTCATCTTCAA 0.428 41 226 MORC1 27136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 108773665 108773665 + Nonsense_Mutation SNP T T A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AATTCCTGTTTATTATGGGAT 0.383 19 76 PRLR 5618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 35065590 35065590 + Silent SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GCAGCCAGGGCGTATCCTGGT 0.483 26 140 PCDHA2 56146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140176926 140176926 + Missense_Mutation SNP T T C TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGAATCAGAATACGTAGGAAA 0.403 14 51 PCDHGA4 56111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140736510 140736510 + Silent SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CACCCCGCTCCGCAGATTCCG 0.592 40 210 RARS 5917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 167921621 167921621 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTAGTGAATGGAGTTCAACTA 0.343 15 101 FARS2 10667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 5431389 5431389 + Silent SNP A A G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGATGGAACAACAACTGGTCA 0.458 20 125 C2 717 hgsc.bcm.edu;ucsc.edu 37 6 31912793 31912793 + Missense_Mutation SNP T T A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GAGCGGAGATTCAGGTTTTTT 0.547 43 173 SPDEF 25803 hgsc.bcm.edu;broad.mit.edu 37 6 34508917 34508917 + Silent SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCTGTCCACAGGAGCCACTTC 0.642 8 10 DSE 29940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 116758080 116758080 + Missense_Mutation SNP A A C TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CAAACGCTATAAATTTGTGGA 0.423 8 50 FLNC 2318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128489530 128489530 + Silent SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGAACCATGACGGTACCTTTG 0.612 11 94 TLN1 7094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35717307 35717307 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCCTACCCCTCGCAACAGTTG 0.617 31 122 ANXA1 301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 75783993 75783993 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TATGGTTTCCCGTTCTGAAAT 0.388 30 137 NIPSNAP3A 25934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 107513272 107513272 + Silent SNP C C T rs146388542 byFrequency TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CCAGACAATACGATGGAATAT 0.363 15 105 IL1RAPL1 11141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 29972757 29972757 + Missense_Mutation SNP G G T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGCTTGAAAAGCATTATGGAT 0.373 16 80 TMEM47 83604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 34648526 34648526 + Missense_Mutation SNP G G T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CATAACCCCAGTTGAACTCAT 0.428 21 126 FAM47B 170062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 34962764 34962764 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AATGCCTGGCGTCATTGAAAA 0.438 52 263 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54776462 54776462 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ATCACAGGCACATCTGGGCCA 0.597 17 54 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54785300 54785300 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GTCGTCACGCCGGCCGTGGGC 0.597 12 37 MAGEE2 139599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 75003755 75003755 + Missense_Mutation SNP A A C TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ACAAGGAGGTAGATGTGCTCA 0.433 24 166 CERS3 204219 broad.mit.edu;ucsc.edu 37 15 100996220 100996220 + Missense_Mutation SNP A A T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCGAGGTGATACATAGGCAAG 0.378 5 27 MYO1D 4642 broad.mit.edu;ucsc.edu 37 17 31107759 31107759 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TTCACAGAAACGACGACTTCT 0.423 10 52 TSPAN33 340348 broad.mit.edu;ucsc.edu 37 7 128802337 128802337 + Missense_Mutation SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGGTCCCTCCGCGAGAACATC 0.627 7 48 LRRC37A5P 652972 broad.mit.edu;ucsc.edu 37 9 114371450 114371450 + RNA SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGTGCAGTCCGTCTTCAAGGT 0.493 48 175 TRIM60 166655 broad.mit.edu;ucsc.edu 37 4 165962269 165962269 + Nonsense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TAGTTCTGGCCGACATTACTG 0.433 20 108 CLEC4C 170482 broad.mit.edu;ucsc.edu 37 12 7883393 7883393 + Splice_Site SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTATACTCACGTGACATTTTC 0.433 19 109 CHD4 1108 broad.mit.edu;ucsc.edu 37 12 6702730 6702730 + Missense_Mutation SNP T T C TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CCGCTCCCAGTTGATGATGGT 0.532 28 159 GRPR 2925 broad.mit.edu;ucsc.edu 37 X 16168588 16168588 + Missense_Mutation SNP A A G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CACCAACCAGACCTTCATTAG 0.502 37 152 ZNF691 51058 broad.mit.edu;ucsc.edu 37 1 43317456 43317456 + Missense_Mutation SNP G G T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ACTCACTTGGGCGAACAGGCT 0.552 6 54 AJ271736.10 0 broad.mit.edu;ucsc.edu 37 X 155254994 155254994 + RNA SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGCCCCCACCGCAACAGCCAC 0.637 4 28 ABCA13 154664 broad.mit.edu;ucsc.edu 37 7 48320993 48320993 + Missense_Mutation SNP T T C TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCAGAAGCCATGGAGATGCTG 0.438 4 29 MUC17 140453 broad.mit.edu;ucsc.edu 37 7 100679593 100679593 + Silent SNP A A G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GAAGTCCTCTATTAACAAGTA 0.493 68 590 PLXNA3 55558 broad.mit.edu;ucsc.edu 37 X 153698493 153698493 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTACCTGACACGGCTGCTGGC 0.617 9 51 IL1RL1 9173 broad.mit.edu;ucsc.edu 37 2 102957203 102957203 + Silent SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGACTGAGGACGCAGGTGATT 0.423 23 94 LRFN5 145581 broad.mit.edu;ucsc.edu 37 14 42355895 42355895 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTGTCCAAAGCGTTGTGTCTG 0.398 5 38 KMT2E 55904 broad.mit.edu;ucsc.edu 37 7 104753522 104753522 + Silent SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CTTTGGGACCGGGACCCCAGC 0.532 43 225 PCDHA1 56147 broad.mit.edu;ucsc.edu 37 5 140166068 140166068 + Missense_Mutation SNP C C T TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TCGCCTGTTCCGGGTGGCGTC 0.587 30 127 ANKRD18DP 348840 broad.mit.edu;ucsc.edu 37 3 197803763 197803763 + RNA SNP G G A TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff CAGTGTTGCCGTAGACATCCT 0.458 4 27 UTP20 27340 broad.mit.edu;ucsc.edu 37 12 101750464 101750464 + Missense_Mutation SNP C C G TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GGAAGCTAATCTGCCAAGGTA 0.363 3 29 AKIP1 56672 broad.mit.edu;hgsc.bcm.edu 37 11 8940912 8940912 + Frame_Shift_Del DEL T T - TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff GACCTCTACATAGAAGTATAT 0.468 30 117 CRYL1 51084 broad.mit.edu;hgsc.bcm.edu 37 13 21013857 21013859 + In_Frame_Del DEL TCT TCT - TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff TGAGCAAAAATCTTCTTCTTCAG 0.419 12 66 F8 2157 broad.mit.edu;hgsc.bcm.edu 37 X 154159063 154159063 + Frame_Shift_Del DEL G G - TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff AGTCAACAAAGCAGGTCCATG 0.343 26 135 RB1 5925 broad.mit.edu 37 13 48955530 48955533 + Frame_Shift_Del DEL ATTT ATTT - TCGA-FG-6688-01A-11D-1893-08 TCGA-FG-6688-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2f93c396-7e42-4ae7-b954-028d5214671d 3a55f162-2e11-46f9-8c0a-4a1f473997ff ATGATAAAACATTTAGAACGATGT 0.328 9 36