Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ACP2	53	hgsc.bcm.edu;broad.mit.edu	37	11	47264838	47264838	+	Silent	SNP	G	G	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	TCGCCATTAGGGTCAGGTTCT	0.562	6	69
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48246530	48246530	+	Missense_Mutation	SNP	G	G	A	rs138254713	by1000genomes	TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	AGCCACGCCCGCTGTGCCCAG	0.577	45	62
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	72998072	72998072	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	AAGCTCTACGGCTCCGTCTTC	0.617	6	54
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu	37	19	10624526	10624526	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	AGAGTCCGGGCGGCTGTGGGT	0.612	12	99
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu	37	20	8665706	8665706	+	Silent	SNP	G	G	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	TTAATTCCTCGCACAACACCT	0.418	14	177
MRGBP	55257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	61428541	61428541	+	Silent	SNP	C	C	G			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	CATCCAAGGTCATCTGGGACC	0.632	24	46
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu	37	2	69329991	69329991	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	TCAAGTTGTCGTGAGAGGAAA	0.473	29	404
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	ATAAGCATGACGACCTATGAT	0.393	25	58
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	146813423	146813423	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	ATTGTCCTTGCGAGCACACCG	0.512	30	93
FYB	2533	hgsc.bcm.edu;ucsc.edu	37	5	39126188	39126188	+	Silent	SNP	A	A	G			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	AACATCTTCAAAATCCCCCAG	0.408	27	32
MDC1	9656	hgsc.bcm.edu;broad.mit.edu	37	6	30679448	30679448	+	Silent	SNP	C	C	T			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	CCTCACCTTCCAGGCCCTGAT	0.468	7	147
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	116397529	116397529	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	AATAAGCATTTCAATATGTCC	0.343	48	66
CA1	759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	86244738	86244738	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	AATTGCTTGGAGGGCATCAAG	0.328	36	41
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76912104	76912104	+	Nonsense_Mutation	SNP	G	G	C			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	ACTAACTCCTGATTCCTGAAA	0.284	25	15
TRIM7	81786	broad.mit.edu;ucsc.edu	37	5	180622600	180622600	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	TGGGCCCGCTCGCCGAGGCGC	0.667	20	80
DIXDC1	85458	broad.mit.edu;ucsc.edu	37	11	111865764	111865764	+	Missense_Mutation	SNP	A	A	T			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	CAACAGTCACAACTCTCAAAG	0.438	85	167
KIF23	9493	broad.mit.edu;ucsc.edu	37	15	69714351	69714351	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	TACATATGGTGTGACGGGAAG	0.408	6	53
KATNA1	11104	broad.mit.edu;hgsc.bcm.edu	37	6	149959574	149959574	+	Frame_Shift_Del	DEL	T	T	-			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	CAGATACTTGTTCATTTGGTC	0.403	78	195
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7579346	7579348	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	CCCAGAATGCAAGAAGCCCAGAC	0.601	31	78
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7579589	7579590	+	Splice_Site	INS	-	-	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	CGGCAAGGGGGACTGTAGATGG	0.594	132	228
ATRX	546	ucsc.edu	37	X	76938860	76938860	+	Nonsense_Mutation	SNP	C	C	A			TCGA-FG-6689-01A-11D-1893-08	TCGA-FG-6689-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00580e36-eea0-455e-90e7-f5ee7bd1cd7b	622315d2-4383-4daa-bbe1-6c1441db2ff8	TTTTCCTGTCCAAGTCCACAT	0.388	54	296