Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ATAD1 84896 hgsc.bcm.edu;broad.mit.edu 37 10 89536119 89536119 + Missense_Mutation SNP T T G TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CAGAGACTCATAAACTGAGCT 0.378 13 220 NPAT 4863 hgsc.bcm.edu;broad.mit.edu 37 11 108043929 108043929 + Silent SNP A A G TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 TATCTTGGCAATTTGATAGCT 0.313 9 131 NCAM1 4684 hgsc.bcm.edu;broad.mit.edu 37 11 113076288 113076288 + Silent SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 AGGAGTTCCGGGAGGGGGAAG 0.507 7 100 KRT76 51350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 53169301 53169301 + Missense_Mutation SNP C C T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 AGGCTCCAGGCTGCTGGGCCC 0.557 80 115 REM2 161253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 23354069 23354069 + Missense_Mutation SNP C C T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 TCCTCTGGCTCGTCTGACTCC 0.612 14 94 CDC42BPB 9578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 103430859 103430859 + Silent SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 TGAGGTTGGCGTCCTTGACCT 0.652 16 63 NDN 4692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 23932264 23932264 + Missense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 GGTCGCGGACGGAGGAACCCC 0.692 7 27 ITGA11 22801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 68643096 68643096 + Missense_Mutation SNP C C T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 GGATTGATCCCCCTGCGGTTG 0.502 29 86 ATXN2L 11273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 28846974 28846974 + Silent SNP T T C TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CACCGGGACCTTCTGCCCAGT 0.662 9 72 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577568 7577568 + Missense_Mutation SNP C C T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 GGAACTGTTACACATGTAGTT 0.572 46 76 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578263 7578263 + Nonsense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CCTTCCACTCGGATAAGATGC 0.552 27 35 MUC16 94025 hgsc.bcm.edu;broad.mit.edu 37 19 9086351 9086351 + Missense_Mutation SNP T T A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 ATTGATGGAGTTGGAGATGGA 0.483 8 137 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu 37 19 11098500 11098500 + Missense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 GGCCCAGCCCGCGCCCATGGT 0.746 11 7 ATP4A 495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36054521 36054521 + Splice_Site SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CCCACTCACGGCCTTCCCCAT 0.652 9 46 PANK4 55229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 2440330 2440330 + Missense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CTGAAGAGCCGGCCGCCCAGC 0.622 19 24 ZZZ3 26009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78041829 78041829 + Missense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 ATACACTGGCGGTTCATGTGA 0.378 39 68 RBMXL1 494115 hgsc.bcm.edu;broad.mit.edu 37 1 89448635 89448635 + Missense_Mutation SNP C C T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 TGGAGCACTACGTGAGTTACC 0.483 19 301 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 57769660 57769660 + Missense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CCCTCTGCCCGCGGAGCAGAA 0.637 25 24 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 ATAAGCATGACGACCTATGAT 0.393 24 75 MSX2 4488 hgsc.bcm.edu;broad.mit.edu 37 5 174156254 174156254 + Missense_Mutation SNP G G A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CCTCGCCCTGGAGCGCAAGTT 0.552 4 78 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 38976646 38976646 + Missense_Mutation SNP A A G TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 ATTCAACCCAAAGAGAGTGGA 0.423 87 158 PHF10 55274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 170112612 170112612 + Missense_Mutation SNP T T C TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 TAATGGCAGATACCGCAGCTC 0.438 10 117 TNFSF15 9966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 117552881 117552881 + Missense_Mutation SNP C C T rs150498686 TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CTACCTACTTCGCATACAGAC 0.527 10 62 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76939522 76939522 + Nonsense_Mutation SNP A A T rs122445109 TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 GTCTTCTTCCAATGCAAGATG 0.363 241 64 CCNB1IP1 57820 broad.mit.edu;ucsc.edu 37 14 20779861 20779861 + Missense_Mutation SNP C C T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CCATCTCCATCGCCCCGATTT 0.398 8 103 RIOK3 8780 broad.mit.edu;ucsc.edu 37 18 21057190 21057190 + Missense_Mutation SNP C C A rs56187215 TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CCCACCCTCACGGCCTGGAGT 0.413 53 70 HSP90AB2P 391634 broad.mit.edu;ucsc.edu 37 4 13339305 13339305 + RNA SNP A A T TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 AAAATCTTCAAAGTCATTCAC 0.423 6 21 MYH2 4620 broad.mit.edu;ucsc.edu 37 17 10451106 10451106 + Missense_Mutation SNP T T A TCGA-FG-6690-01A-11D-1893-08 TCGA-FG-6690-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 68080470-9502-41cb-b0e1-786f2c3fe62a b8e3eb49-7c11-4317-93ef-7dae88807e25 CAAAGGATTCTTTGGGCTCCG 0.537 83 122