Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 70451205 70451205 + Silent SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CACCTGCTCACGGCTCGGTTT 0.532 107 189 ZNF143 7702 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 9499964 9499964 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GCATTACAGGCGGTTCAGCTG 0.433 82 127 AGBL2 79841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 47726176 47726176 + Missense_Mutation SNP T T C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GTAGACAAAATGGAAAAGAGC 0.428 21 69 KIF21A 55605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 39763607 39763607 + Missense_Mutation SNP A A G TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e TTTTTCTTCAATACTCTTAAA 0.338 7 25 KIF21A 55605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 39763628 39763628 + Missense_Mutation SNP A A C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e AAGGTGTTTAACAGCTCGAGA 0.348 10 46 KMT2D 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49431213 49431213 + Missense_Mutation SNP G G A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CTGCTGTTGGGACCCAGCCAA 0.627 12 6 SLITRK5 26050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 88329160 88329160 + Missense_Mutation SNP A A G TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CCGGTCCCAAACCTCCAGCTG 0.532 45 76 BMP4 652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 54416985 54416985 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GGCCTGGTAGCCTGGTGGGGC 0.572 9 67 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GCACAAACACGCACCTCAAAG 0.542 28 3 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9057582 9057582 + Missense_Mutation SNP G G C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GGTGGTGATGGTCATTTGTGT 0.498 54 300 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9068570 9068570 + Silent SNP T T A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GCATTGTGTGTGTATCTGTGG 0.453 28 165 GRIN2D 2906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 48945567 48945567 + Missense_Mutation SNP C C A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CCTGGGAGCACCTGGTGTACT 0.647 53 46 PTPRH 5794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55693430 55693430 + Missense_Mutation SNP A A T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CTTCCTTACAAAGCTGAAGGG 0.622 36 93 NLRP9 338321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56244181 56244181 + Missense_Mutation SNP G G A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CAACCAGCACGTAAAGGGATT 0.413 39 36 PLEKHN1 84069 hgsc.bcm.edu;broad.mit.edu 37 1 907741 907741 + Silent SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e TGTGCCTTCGCGCTGTCACCC 0.677 5 19 PKLR 5313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 155261708 155261708 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e AGGTCGGTACCGAGACAGAAG 0.577 20 91 IGSF8 93185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 160064985 160064985 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GCCAGCCACGCGGTACAAGGG 0.617 10 47 SRMS 6725 hgsc.bcm.edu;broad.mit.edu 37 20 62178604 62178604 + Silent SNP A A G TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CGCGGCGGACACTCAGCTCCC 0.697 7 7 TIMP3 7078 hgsc.bcm.edu;ucsc.edu 37 22 33255348 33255348 + Missense_Mutation SNP A A G TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e AGCATCATCAATGCCACAGAC 0.592 4 34 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 141739804 141739804 + Missense_Mutation SNP G G A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GGAATGCAACGCCCATTTCCG 0.423 19 94 ACVR2A 92 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 148653873 148653873 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CTTATAGGTGCTATACTTGGT 0.333 14 76 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e ATAAGCATGACGACCTATGAT 0.393 43 69 SMARCC1 6599 hgsc.bcm.edu;broad.mit.edu 37 3 47719787 47719787 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CATAAAATTTCGATATGCCAA 0.388 9 166 ZBTB49 166793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 4304568 4304568 + Silent SNP G G A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GTTTGACAAAGAGGTTGGAAT 0.398 24 38 GUF1 60558 hgsc.bcm.edu;broad.mit.edu 37 4 44693681 44693681 + Splice_Site SNP A A G TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e TTCCCTTTTTAGGCTCGAAGA 0.299 10 160 SLC10A6 345274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 87770048 87770048 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CCCAAACTGGCAGAGCAGTCC 0.542 7 42 NPY1R 4886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 164246852 164246852 + Missense_Mutation SNP T T C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e ACTGGACCTGTACTTATTGTC 0.368 16 36 NOTCH4 4855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32188018 32188018 + Nonsense_Mutation SNP G G T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CATCCCCATGGCACGGCTGGC 0.622 17 95 NCOA7 135112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 126210341 126210341 + Missense_Mutation SNP T T C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e TAGGGAGACATCCCATGGTTC 0.458 9 37 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 107823139 107823139 + Splice_Site SNP G G A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CATCACTTACGGTCTTCTCCA 0.522 22 40 CCDC136 64753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128432468 128432468 + Missense_Mutation SNP G G A TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GACGGGGGATGCAAGCTATGG 0.582 16 87 MUC2 4583 broad.mit.edu;ucsc.edu 37 11 1086051 1086051 + Missense_Mutation SNP C C T rs72655318 TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GAGTCCAGCACGGGCATCATC 0.632 20 30 FFAR1 2864 broad.mit.edu;ucsc.edu 37 19 35842815 35842815 + Missense_Mutation SNP T T C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e CCGGAGGCCGTGCTATTCCTG 0.677 11 49 ANO8 57719 broad.mit.edu;ucsc.edu 37 19 17438523 17438523 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GCTTTCCACGCGCTGGCCGAA 0.682 26 41 FHDC1 85462 broad.mit.edu;ucsc.edu 37 4 153897446 153897446 + Missense_Mutation SNP G G C TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e AGGAAAATAAGACCTGCCGCG 0.632 4 37 CENPF 1063 broad.mit.edu;ucsc.edu 37 1 214803886 214803886 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GGAGCTCTCCCGTCAACAGCG 0.537 37 246 SIMC1 375484 broad.mit.edu;ucsc.edu 37 5 175716891 175716891 + Missense_Mutation SNP C C T TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e GCCTACAGCACGGAGAATCAT 0.522 15 98 IL18 3606 broad.mit.edu;ucsc.edu 37 11 112025712 112025712 + Missense_Mutation SNP G G A rs61734549 by1000genomes TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e AAAGTAAAGCGTATTGTCAAT 0.343 10 36 DGKH 160851 broad.mit.edu;hgsc.bcm.edu 37 13 42783569 42783569 + Frame_Shift_Del DEL A A - TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e AATTGTGCACAAAAACAGAGC 0.378 40 49 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76855040 76855046 + Frame_Shift_Del DEL TTTCTTC TTTCTTC - TCGA-FG-7636-01A-11D-2086-08 TCGA-FG-7636-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 69986481-decd-42b7-9286-6850f1956764 667c8d9c-4ed8-4f36-99fb-84a6df7b0e5e TTTTCCCTTTTTTCTTCTTTCTaaaaa 0.353 63 73