Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count LOXL4 84171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 100012144 100012144 + Silent SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GACAGAAGCTGGCCTTGTGCC 0.532 28 282 FNBP4 23360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 47755624 47755624 + Missense_Mutation SNP T T C TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GATTGTCTATTAATGCCTAGA 0.328 27 57 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 82877743 82877743 + Missense_Mutation SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 ATCTGGTTGGGAAGAAAATAA 0.318 37 66 DBX2 440097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 45410365 45410365 + Missense_Mutation SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 TTGGAATTCCGCCATTTCATC 0.403 17 184 RNF17 56163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 25428134 25428134 + Silent SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 TCAGTGAACAGAAAGTGTCTG 0.403 34 39 CCDC70 83446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 52439604 52439604 + Silent SNP G G A rs112168960 TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GGTCCCTGGCGGCATCCTCTC 0.507 19 173 CDKN3 1033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 54884631 54884631 + Nonsense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 AGACAGCCTGCGAGACCTAAG 0.458 14 22 CLMN 79789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 95670323 95670323 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CTCAATGATTCCTTTGCCACT 0.468 17 47 HDC 3067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 50534698 50534698 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 ACTGAGGGAGCGCACCGTCTT 0.542 119 236 GGT6 124975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4463042 4463042 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CCGGGCAGCCCGCCAGCCTTG 0.652 10 58 KRT35 3886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39635168 39635168 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CTCCAGAACTCGGTTCAGGTC 0.552 8 85 NOL4 8715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 31538334 31538334 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CCTCGGTCTACACTCTCATTT 0.448 69 167 BIRC8 112401 hgsc.bcm.edu;broad.mit.edu 37 19 53793157 53793157 + Silent SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 TAGTGTCTTTCTGAGCGCTCA 0.408 3 62 AMER3 205147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 131521709 131521709 + Silent SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 TCAGCTCAAACGAACAGCCCC 0.652 12 10 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 ATAAGCATGACGACCTATGAT 0.393 40 99 SETMAR 6419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 4358185 4358185 + Missense_Mutation SNP A A G TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 gaagaactcaatgtcaaccat 0.448 7 15 CLDN16 10686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 190120187 190120187 + Missense_Mutation SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GATGGGATTCGCACCTGTGAT 0.488 29 216 GUCY1A3 2982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 156631972 156631972 + Missense_Mutation SNP A A G TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 TCCCGGCATCATAAAGGCAGC 0.458 49 116 OR2Y1 134083 hgsc.bcm.edu;broad.mit.edu 37 5 180166657 180166657 + Silent SNP G G T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GGTGCATGATGGCCATGTAGT 0.587 4 76 PHF3 23469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 64394227 64394227 + Nonsense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 AAGGTGCAGCCGAAATAGCGG 0.403 36 82 DPY19L1 23333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 34977700 34977700 + Missense_Mutation SNP T T A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GCTTTCCGACTATACATTGAG 0.328 20 19 TSPAN33 340348 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128804343 128804343 + Missense_Mutation SNP A A G TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GAGATCATCAACAATGCCATT 0.493 156 227 TBXAS1 6916 hgsc.bcm.edu;broad.mit.edu 37 7 139529240 139529240 + Silent SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CCATGGTGACGGTGGCCCTGT 0.572 4 70 CCIN 881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 36170121 36170121 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GGTGTACTTCCGGAAGGAGGA 0.488 23 44 ALDH1A1 216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 75520934 75520934 + Missense_Mutation SNP C C T TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 ACTTACCACGCCATAGCAATT 0.343 17 61 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu 37 9 139412245 139412245 + Missense_Mutation SNP C C A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CTGGTCCAGGCAGGTGGCGTC 0.677 6 126 CXorf22 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 35966455 35966455 + Missense_Mutation SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 GAATACCACGGCCAATTACCC 0.413 74 152 CXorf22 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 35993797 35993797 + Missense_Mutation SNP C C A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 AGGTCTTTCACCTTTACAGTG 0.383 40 67 GRIA3 2892 hgsc.bcm.edu;broad.mit.edu 37 X 122598965 122598965 + Splice_Site SNP T T A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 AGCATTAAGGTGGGTGGAATA 0.393 9 128 CATSPERD 257062 broad.mit.edu;ucsc.edu 37 19 5727283 5727283 + Missense_Mutation SNP G G A TCGA-FG-8186-01A-11D-2253-08 TCGA-FG-8186-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 729f5374-cda6-4f84-8843-8d638ede22d1 033c9e3a-1498-4e9d-bbb1-2ab70851c8b8 CTCTAGGACCGCCTGTATTTT 0.338 8 95